Variant report

Variant	rs10137330
Chromosome Location	chr14:68574805-68574806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68573827..68576752-chr14:68577004..68581266,3	MCF-7	breast:
2	chr14:68569098..68575378-chr14:68600721..68608879,10	MCF-7	breast:
3	chr14:68574384..68576780-chr14:68577094..68579795,2	MCF-7	breast:
4	chr14:68569512..68572428-chr14:68574318..68576460,3	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10133770	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10134124	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10134320	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10134664	0.86[ASN][1000 genomes]
rs10135046	0.86[ASN][1000 genomes]
rs10135256	0.86[ASN][1000 genomes]
rs10140465	0.84[ASN][1000 genomes]
rs10141018	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10144224	0.86[ASN][1000 genomes]
rs10145197	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145820	0.84[ASN][1000 genomes]
rs10147311	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10148713	1.00[EUR][1000 genomes]
rs10149801	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10150584	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10150789	0.84[ASN][1000 genomes]
rs10873211	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873212	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158720	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158721	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844842	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847339	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11849196	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851597	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11851991	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104880	0.86[ASN][1000 genomes]
rs17104900	0.84[ASN][1000 genomes]
rs17104917	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104947	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104953	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104992	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105001	0.94[ASN][1000 genomes]
rs1951411	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057361	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2767364	1.00[EUR][1000 genomes]
rs28372014	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28448732	0.84[ASN][1000 genomes]
rs28716846	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34370899	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902548	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902550	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60562079	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60841871	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573815	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573816	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7145089	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7147522	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147935	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7148799	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149343	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7150716	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153978	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154228	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7155152	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7157152	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160068	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161070	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73286292	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359083	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8007347	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8008413	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8011367	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012493	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8013061	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018029	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68569000-68576000	Weak transcription	Adipose Nuclei	Adipose
2	chr14:68569000-68578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:68569200-68575800	Weak transcription	Primary T cells from cord blood	blood
4	chr14:68569200-68579200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68569400-68576200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr14:68571400-68576200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:68571600-68576000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:68571600-68576000	Weak transcription	A549	lung
9	chr14:68571600-68577400	Weak transcription	Fetal Kidney	kidney
10	chr14:68571800-68575200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:68571800-68575200	Weak transcription	NHDF-Ad	bronchial
12	chr14:68571800-68575800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:68571800-68576000	Weak transcription	Osteobl	bone
14	chr14:68571800-68580200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr14:68572000-68575800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:68572000-68576000	Weak transcription	NHLF	lung
17	chr14:68572000-68580200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:68572200-68575600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:68572800-68575800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:68573000-68575800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:68573400-68575800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr14:68573400-68576200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr14:68573600-68576000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:68573600-68579400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr14:68573600-68580200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr14:68573800-68575800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr14:68573800-68578400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:68573800-68578400	Weak transcription	NHEK	skin
29	chr14:68573800-68591800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr14:68574000-68575600	Weak transcription	Colon Smooth Muscle	Colon
31	chr14:68574000-68575800	Weak transcription	Fetal Lung	lung
32	chr14:68574600-68575800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr14:68574800-68577200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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