Variant report

Variant	rs1951411
Chromosome Location	chr14:68592012-68592013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68588139..68594823-chr14:68601028..68606199,6	MCF-7	breast:
2	chr14:68590213..68592224-chr14:68596634..68599036,2	MCF-7	breast:
3	chr14:68589896..68592803-chr14:68593346..68594883,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFYVE26-1	chr14:68591721-68592126	ENSG00000258837.1

Variant related genes	Relation type
ENSG00000258837	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10129355	0.81[JPT][hapmap]
rs10129612	0.89[JPT][hapmap]
rs10132022	0.81[JPT][hapmap]
rs10132711	0.84[JPT][hapmap]
rs10132828	0.84[JPT][hapmap]
rs10133770	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10134124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10134320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10134664	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10135046	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10135256	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10135316	0.90[JPT][hapmap]
rs10135925	0.90[JPT][hapmap]
rs10137330	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137457	1.00[JPT][hapmap]
rs10137712	0.90[JPT][hapmap]
rs10139236	0.81[JPT][hapmap]
rs10139386	0.81[JPT][hapmap]
rs10140465	0.84[ASN][1000 genomes]
rs10141018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10143219	0.90[JPT][hapmap]
rs10143455	0.81[JPT][hapmap]
rs10143895	0.90[JPT][hapmap]
rs10144128	0.90[JPT][hapmap]
rs10144224	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10145197	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145820	0.84[ASN][1000 genomes]
rs10146719	0.90[JPT][hapmap]
rs10146766	0.90[JPT][hapmap]
rs10146831	0.86[JPT][hapmap]
rs10147311	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10147569	0.90[JPT][hapmap]
rs10148713	1.00[EUR][1000 genomes]
rs10149801	0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10150584	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10150789	0.84[ASN][1000 genomes]
rs10151123	0.90[JPT][hapmap]
rs10151317	0.90[JPT][hapmap]
rs10450891	0.89[JPT][hapmap]
rs1080958	0.81[JPT][hapmap]
rs10873211	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873212	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158710	0.90[JPT][hapmap]
rs11158719	0.81[JPT][hapmap]
rs11158720	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622787	0.81[JPT][hapmap]
rs11623355	0.81[JPT][hapmap]
rs11623467	0.81[JPT][hapmap]
rs11844842	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11849196	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851597	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11851991	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12437178	0.81[JPT][hapmap]
rs1548264	0.81[JPT][hapmap]
rs1548265	0.81[JPT][hapmap]
rs17104783	0.86[JPT][hapmap]
rs17104786	0.90[JPT][hapmap]
rs17104793	0.89[JPT][hapmap]
rs17104796	0.90[JPT][hapmap]
rs17104799	0.89[JPT][hapmap]
rs17104823	0.90[JPT][hapmap]
rs17104824	0.90[JPT][hapmap]
rs17104827	0.90[JPT][hapmap]
rs17104829	0.90[JPT][hapmap]
rs17104862	1.00[JPT][hapmap]
rs17104863	1.00[JPT][hapmap]
rs17104880	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17104889	0.81[JPT][hapmap]
rs17104900	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17104908	0.81[JPT][hapmap]
rs17104917	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105001	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1950766	0.90[JPT][hapmap]
rs1980654	0.81[JPT][hapmap]
rs1980655	0.81[JPT][hapmap]
rs2057361	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2208596	0.81[JPT][hapmap]
rs2767364	1.00[EUR][1000 genomes]
rs28372014	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28448732	0.84[ASN][1000 genomes]
rs28716846	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34370899	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60562079	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60841871	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573802	0.89[JPT][hapmap]
rs6573805	0.81[JPT][hapmap]
rs6573815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7145089	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7147522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147935	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7148799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149343	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149460	0.90[JPT][hapmap]
rs7150168	0.81[JPT][hapmap]
rs7150716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153978	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154725	0.90[JPT][hapmap]
rs7155152	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7157152	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157550	0.90[JPT][hapmap]
rs7157720	0.90[JPT][hapmap]
rs7160068	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161070	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73286292	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359083	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8007347	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8008413	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8008791	0.90[JPT][hapmap]
rs8011367	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012493	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8013061	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014000	0.81[JPT][hapmap]
rs8015741	0.90[JPT][hapmap]
rs8018029	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8020512	0.90[JPT][hapmap]
rs8020795	0.81[JPT][hapmap]
rs957930	1.00[JPT][hapmap]
rs9652362	0.90[JPT][hapmap]
rs9652363	0.90[JPT][hapmap]
rs9652364	0.90[JPT][hapmap]
rs9672111	1.00[JPT][hapmap]
rs9796374	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68578600-68592800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr14:68580600-68598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:68583600-68593800	Weak transcription	Stomach Mucosa	stomach
4	chr14:68588600-68593000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr14:68590600-68593400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:68590800-68592400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr14:68591000-68592600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:68591000-68593000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:68591000-68593400	Enhancers	Fetal Kidney	kidney
10	chr14:68591200-68592800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:68591200-68595800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:68591600-68592400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:68591600-68592400	Enhancers	Fetal Muscle Leg	muscle
14	chr14:68591600-68592600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:68591600-68592800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr14:68591600-68592800	Enhancers	Fetal Intestine Large	intestine
17	chr14:68591600-68593000	Enhancers	NH-A	brain
18	chr14:68591600-68593200	Enhancers	HSMM	muscle
19	chr14:68591600-68593200	Enhancers	NHEK	skin
20	chr14:68591600-68594200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:68591800-68592200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr14:68591800-68592200	Flanking Active TSS	Colon Smooth Muscle	Colon
23	chr14:68591800-68592200	Flanking Active TSS	NHDF-Ad	bronchial
24	chr14:68591800-68592400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr14:68591800-68592400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:68591800-68592400	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr14:68591800-68592400	Enhancers	Aorta	Aorta
28	chr14:68591800-68592400	Enhancers	Brain Germinal Matrix	brain
29	chr14:68591800-68592400	Enhancers	HepG2	liver
30	chr14:68591800-68592400	Enhancers	HMEC	breast
31	chr14:68591800-68592600	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr14:68591800-68592600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:68591800-68592600	Enhancers	Liver	Liver
34	chr14:68591800-68592600	Enhancers	Stomach Smooth Muscle	stomach
35	chr14:68591800-68592600	Flanking Active TSS	A549	lung
36	chr14:68591800-68592800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:68591800-68593200	Enhancers	Fetal Heart	heart
38	chr14:68591800-68593200	Enhancers	HSMMtube	muscle
39	chr14:68591800-68593400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr14:68591800-68593400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:68591800-68593400	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr14:68591800-68593400	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr14:68591800-68594200	Enhancers	Fetal Stomach	stomach
44	chr14:68591800-68594600	Enhancers	Fetal Lung	lung
45	chr14:68592000-68592200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:68592000-68592200	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr14:68592000-68592200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr14:68592000-68592200	Enhancers	Adipose Nuclei	Adipose
49	chr14:68592000-68592400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:68592000-68592400	Enhancers	Duodenum Smooth Muscle	Duodenum

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