Variant report

Variant	rs11623467
Chromosome Location	chr14:68540746-68540747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68532155..68533978-chr14:68540126..68542648,2	MCF-7	breast:

Extended variants
information (count: 165 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs10129355	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10129612	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10132022	0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs10133262	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs10133652	0.93[CHD][hapmap]
rs10133883	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10134124	0.81[JPT][hapmap]
rs10134664	0.81[JPT][hapmap]
rs10135046	0.81[JPT][hapmap]
rs10135256	0.81[JPT][hapmap]
rs10135925	0.93[CHD][hapmap]
rs10136129	0.80[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs10136790	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10136868	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10137233	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139236	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139386	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140097	0.80[CEU][hapmap];0.81[ASN][1000 genomes]
rs10140420	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140493	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143455	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.81[ASN][1000 genomes]
rs10143843	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10144128	0.93[CHD][hapmap]
rs10144224	0.81[JPT][hapmap]
rs10145197	0.81[JPT][hapmap]
rs10147311	0.88[JPT][hapmap]
rs10148527	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs1015023	0.81[GIH][hapmap]
rs10150584	0.81[JPT][hapmap]
rs10151115	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080956	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080957	0.95[CEU][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080958	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158710	0.93[CHD][hapmap]
rs11158715	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs11158717	0.94[ASN][1000 genomes]
rs11158718	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11158719	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158720	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs11158721	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs11622787	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11623355	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11623984	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11624209	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624484	0.83[EUR][1000 genomes]
rs11626594	0.81[GIH][hapmap]
rs11628745	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844529	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs11844842	0.81[JPT][hapmap]
rs11846344	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs11847339	0.81[JPT][hapmap]
rs11848187	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11850191	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs11851991	0.81[JPT][hapmap]
rs11852180	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs12100584	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs12431697	0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.82[TSI][hapmap]
rs12432681	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12436203	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12437043	0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs12437178	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs13329056	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1548264	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1548265	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104764	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs17104776	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs17104786	0.93[CHD][hapmap]
rs17104796	0.93[CHD][hapmap]
rs17104800	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs17104823	0.93[CHD][hapmap]
rs17104862	0.81[JPT][hapmap]
rs17104863	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs17104880	0.81[JPT][hapmap]
rs17104889	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104900	0.81[JPT][hapmap]
rs17104908	0.93[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17104917	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs17104947	0.81[JPT][hapmap]
rs17104992	0.81[JPT][hapmap]
rs17105001	0.81[JPT][hapmap]
rs17783202	0.93[CHD][hapmap]
rs1810639	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950769	0.81[GIH][hapmap]
rs1951411	0.81[JPT][hapmap]
rs1980654	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1980655	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2093358	0.81[ASN][1000 genomes]
rs2180537	0.93[CHD][hapmap]
rs2208596	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2588832	1.00[CHD][hapmap];0.83[JPT][hapmap]
rs2588833	1.00[CHD][hapmap];0.83[JPT][hapmap]
rs2767366	1.00[CHD][hapmap];0.83[JPT][hapmap]
rs28470365	0.84[ASN][1000 genomes]
rs28474827	0.90[ASN][1000 genomes]
rs2877369	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs33949561	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34558039	0.83[EUR][1000 genomes]
rs372143	1.00[CHD][hapmap];0.83[JPT][hapmap]
rs373918	0.83[JPT][hapmap]
rs401021	0.83[JPT][hapmap]
rs408156	0.83[JPT][hapmap]
rs411547	0.82[JPT][hapmap]
rs431649	1.00[CHD][hapmap];0.83[JPT][hapmap]
rs437585	0.83[JPT][hapmap]
rs4436722	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs4899231	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899232	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902535	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs4902536	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs4902538	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs4902540	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs4902544	0.81[ASN][1000 genomes]
rs4902545	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902547	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902548	0.81[JPT][hapmap]
rs4902550	0.81[JPT][hapmap]
rs57069083	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57990032	0.84[ASN][1000 genomes]
rs60471554	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573805	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6573814	0.80[CEU][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573815	0.81[JPT][hapmap]
rs6573816	0.81[JPT][hapmap]
rs67566613	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68139749	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142112	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs7142210	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs7146354	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs7147296	0.93[CHD][hapmap]
rs7147522	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs7147935	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs7148799	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs7149343	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs7150168	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7151235	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs7154228	0.81[JPT][hapmap]
rs7154646	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs7155097	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs7155840	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs7156822	0.87[ASN][1000 genomes]
rs7157152	0.82[JPT][hapmap]
rs7157185	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs7158544	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7161069	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72725183	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72725185	0.84[EUR][1000 genomes]
rs72725186	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72725187	0.84[EUR][1000 genomes]
rs72725188	0.84[EUR][1000 genomes]
rs72725190	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359083	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs8006492	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8007347	0.93[CHD][hapmap];0.81[JPT][hapmap]
rs8008791	0.93[CHD][hapmap]
rs8011621	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012493	0.81[JPT][hapmap]
rs8014000	0.83[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016525	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs8018029	0.81[JPT][hapmap]
rs8020795	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.81[ASN][1000 genomes]
rs9323501	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs9323502	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957930	0.81[JPT][hapmap]
rs9672142	0.89[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68544000	Weak transcription	Aorta	Aorta
2	chr14:68532400-68552400	Weak transcription	Ovary	ovary
3	chr14:68538200-68543600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:68539000-68542600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:68539400-68541800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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