Variant report

Variant	rs72725187
Chromosome Location	chr14:68545021-68545022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68543487..68545559-chr14:68606941..68608872,2	MCF-7	breast:
2	chr14:68541688..68545482-chr14:68601842..68606347,5	MCF-7	breast:
3	chr14:68428226..68431035-chr14:68543986..68545553,2	MCF-7	breast:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10137233	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10139236	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10139386	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10140420	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10140493	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10151115	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1080956	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1080957	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1080958	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11158716	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11158718	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158719	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11622135	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11623467	0.84[EUR][1000 genomes]
rs11624209	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11624484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624609	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11628745	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11629073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848769	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11850946	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11852208	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12432193	0.86[ASN][1000 genomes]
rs12435554	0.85[AFR][1000 genomes]
rs12436203	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437276	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12437441	0.86[ASN][1000 genomes]
rs1548264	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1548265	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17104889	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17104908	0.85[EUR][1000 genomes]
rs17192558	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17192586	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17783304	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1810639	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1951410	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2038565	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588833	0.82[EUR][1000 genomes]
rs2588834	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2767365	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28470365	0.80[EUR][1000 genomes]
rs28649231	0.83[AFR][1000 genomes]
rs33949561	0.82[EUR][1000 genomes]
rs34558039	0.90[EUR][1000 genomes]
rs34588410	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34723132	0.82[AFR][1000 genomes]
rs35517486	0.86[ASN][1000 genomes]
rs365934	0.85[EUR][1000 genomes]
rs372143	0.85[EUR][1000 genomes]
rs373918	0.85[EUR][1000 genomes]
rs378408	0.85[EUR][1000 genomes]
rs401021	0.85[EUR][1000 genomes]
rs411547	0.85[EUR][1000 genomes]
rs419450	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs424032	0.80[EUR][1000 genomes]
rs431649	0.85[EUR][1000 genomes]
rs435620	0.85[EUR][1000 genomes]
rs437585	0.82[EUR][1000 genomes]
rs440627	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs445921	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs448445	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4899231	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4899232	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4902545	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4902547	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57069083	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67566613	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68139749	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7141160	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7141450	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7145044	0.82[AFR][1000 genomes]
rs7150168	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7151235	0.86[EUR][1000 genomes]
rs7151917	0.85[AFR][1000 genomes]
rs7154014	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155985	0.85[AFR][1000 genomes]
rs72725141	0.85[AFR][1000 genomes]
rs72725149	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725151	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725153	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725156	0.87[ASN][1000 genomes]
rs72725157	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725159	0.87[ASN][1000 genomes]
rs72725165	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725168	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725170	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725172	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725174	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72725183	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725186	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725190	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8011621	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8014000	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8014524	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8015128	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021404	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022206	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323502	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68552400	Weak transcription	Ovary	ovary
2	chr14:68541600-68547200	Weak transcription	Fetal Lung	lung
3	chr14:68541800-68547200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:68542000-68547000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:68542200-68547200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:68542200-68555000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:68542400-68546800	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:68542600-68546600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr14:68542600-68546600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:68542600-68547000	Weak transcription	Gastric	stomach
11	chr14:68542600-68548000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:68542600-68551000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:68542600-68552400	Weak transcription	Lung	lung
14	chr14:68542800-68547000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:68542800-68547000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr14:68542800-68547200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:68542800-68547200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:68542800-68552000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr14:68542800-68552400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr14:68542800-68555400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:68543000-68546600	Weak transcription	HepG2	liver
22	chr14:68543000-68546800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr14:68543200-68546800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:68543800-68545200	Enhancers	Stomach Mucosa	stomach
25	chr14:68543800-68549200	Weak transcription	NHEK	skin
26	chr14:68544000-68549200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:68544000-68550600	Weak transcription	Fetal Intestine Small	intestine
28	chr14:68544000-68555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:68544400-68546600	Weak transcription	A549	lung
30	chr14:68545000-68545200	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr14:68545000-68545600	Weak transcription	Primary B cells from peripheral blood	blood

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