Variant report

Variant	rs12437441
Chromosome Location	chr14:68524222-68524223
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11158716	1.00[JPT][hapmap]
rs11158718	1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs11622135	1.00[JPT][hapmap]
rs11624484	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11626332	1.00[JPT][hapmap]
rs11629073	0.86[ASN][1000 genomes]
rs11848769	1.00[JPT][hapmap]
rs11850946	1.00[JPT][hapmap]
rs12432193	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432558	1.00[JPT][hapmap]
rs12433779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12435554	1.00[JPT][hapmap]
rs12436203	0.86[ASN][1000 genomes]
rs1274646	1.00[JPT][hapmap]
rs17192558	1.00[JPT][hapmap]
rs17192586	1.00[JPT][hapmap]
rs17783304	1.00[JPT][hapmap]
rs2038565	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588814	0.82[YRI][hapmap]
rs2588819	0.82[YRI][hapmap]
rs2767365	1.00[YRI][hapmap]
rs35517486	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35701137	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35803514	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7141160	1.00[JPT][hapmap]
rs7141450	1.00[JPT][hapmap]
rs7145044	1.00[JPT][hapmap]
rs7150705	1.00[JPT][hapmap]
rs7150903	1.00[JPT][hapmap]
rs7151495	1.00[JPT][hapmap]
rs7154014	0.86[ASN][1000 genomes]
rs72725168	0.86[ASN][1000 genomes]
rs72725170	0.86[ASN][1000 genomes]
rs72725172	0.86[ASN][1000 genomes]
rs72725174	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs72725183	0.86[ASN][1000 genomes]
rs72725185	0.86[ASN][1000 genomes]
rs72725186	0.86[ASN][1000 genomes]
rs72725187	0.86[ASN][1000 genomes]
rs72725188	0.86[ASN][1000 genomes]
rs8015128	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8021404	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8022206	1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv977622	chr14:68514820-68532469	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68514800-68527000	Weak transcription	Ovary	ovary

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