Variant report

Variant	rs12433779
Chromosome Location	chr14:68444462-68444463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68431169..68433591-chr14:68443771..68448104,4	MCF-7	breast:
2	chr14:68442494..68447926-chr14:68448163..68454311,7	MCF-7	breast:
3	chr14:68436786..68439178-chr14:68441166..68444882,3	MCF-7	breast:
4	chr14:68443247..68445751-chr14:68449308..68451407,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10135927	0.86[ASN][1000 genomes]
rs10141638	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1040598	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11158700	0.86[ASN][1000 genomes]
rs11158701	0.86[ASN][1000 genomes]
rs11158716	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11158718	1.00[JPT][hapmap];0.87[YRI][hapmap]
rs11621019	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11622135	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11624484	1.00[JPT][hapmap]
rs11626332	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11626769	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11848769	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11850946	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11852208	0.86[ASN][1000 genomes]
rs12431490	0.86[ASN][1000 genomes]
rs12432193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12432558	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12433710	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12434751	0.86[ASN][1000 genomes]
rs12435554	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12437276	0.86[ASN][1000 genomes]
rs12437441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12891164	1.00[JPT][hapmap]
rs1543391	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17192558	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17192586	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17783094	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17783304	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1810523	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs181561	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs181564	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs181565	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs181570	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs181576	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2038565	1.00[JPT][hapmap]
rs2235967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2295106	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2295107	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2588814	0.85[YRI][hapmap]
rs2588819	0.85[YRI][hapmap]
rs2767365	1.00[YRI][hapmap]
rs28649231	0.81[ASN][1000 genomes]
rs28713367	0.86[ASN][1000 genomes]
rs2874132	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2874133	1.00[JPT][hapmap]
rs34588410	0.86[ASN][1000 genomes]
rs34723132	0.86[ASN][1000 genomes]
rs34759521	0.93[ASN][1000 genomes]
rs35272075	0.86[ASN][1000 genomes]
rs35517486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35701137	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35803514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4143685	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55867043	0.86[ASN][1000 genomes]
rs7141160	1.00[JPT][hapmap]
rs7141450	1.00[JPT][hapmap]
rs7142433	1.00[CHB][hapmap]
rs7143196	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7143496	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7145044	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7149482	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7150705	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7150903	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7151495	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7151917	0.86[ASN][1000 genomes]
rs7155985	0.86[ASN][1000 genomes]
rs7159622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72725114	0.86[ASN][1000 genomes]
rs72725127	0.86[ASN][1000 genomes]
rs72725141	0.86[ASN][1000 genomes]
rs72725149	0.86[ASN][1000 genomes]
rs72725151	0.86[ASN][1000 genomes]
rs72725153	0.86[ASN][1000 genomes]
rs72725156	0.86[ASN][1000 genomes]
rs72725157	0.86[ASN][1000 genomes]
rs72725159	0.86[ASN][1000 genomes]
rs72725165	0.86[ASN][1000 genomes]
rs764088	0.86[ASN][1000 genomes]
rs8015128	1.00[JPT][hapmap]
rs8021404	1.00[JPT][hapmap]
rs8022206	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68429400-68445200	Weak transcription	Ovary	ovary
2	chr14:68438600-68451200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:68439200-68445200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:68439600-68445200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:68440400-68445400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:68442600-68454400	Weak transcription	Fetal Kidney	kidney
7	chr14:68443600-68445800	Enhancers	Fetal Lung	lung
8	chr14:68443600-68446400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr14:68443800-68444600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr14:68443800-68444600	Enhancers	Stomach Mucosa	stomach
11	chr14:68443800-68445600	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr14:68443800-68445800	Enhancers	Colon Smooth Muscle	Colon
13	chr14:68443800-68446000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:68444000-68444600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:68444000-68444600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:68444000-68444600	Enhancers	Fetal Intestine Large	intestine
17	chr14:68444000-68444600	Enhancers	Fetal Intestine Small	intestine
18	chr14:68444000-68445200	Enhancers	Rectal Smooth Muscle	rectum
19	chr14:68444000-68445400	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr14:68444000-68445400	Enhancers	Small Intestine	intestine
21	chr14:68444000-68445400	Enhancers	Stomach Smooth Muscle	stomach
22	chr14:68444000-68445800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:68444000-68446000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr14:68444000-68446000	Enhancers	Fetal Stomach	stomach
25	chr14:68444200-68444600	Enhancers	HMEC	breast
26	chr14:68444200-68445800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr14:68444200-68446000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr14:68444400-68444600	Enhancers	Primary hematopoietic stem cells	blood
29	chr14:68444400-68444800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr14:68444400-68444800	Enhancers	A549	lung
31	chr14:68444400-68445200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr14:68444400-68445800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr14:68444400-68446000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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