Variant report

Variant	rs11158700
Chromosome Location	chr14:68341182-68341183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10130919	0.82[AMR][1000 genomes]
rs10133239	0.82[AMR][1000 genomes]
rs10135927	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10137614	0.81[AMR][1000 genomes]
rs10137930	0.81[AMR][1000 genomes]
rs10141638	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10146380	0.83[AMR][1000 genomes]
rs10148527	0.88[EUR][1000 genomes]
rs10150007	0.81[AMR][1000 genomes]
rs1015023	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10873208	0.82[AMR][1000 genomes]
rs11158697	0.82[AMR][1000 genomes]
rs11158701	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158716	0.87[ASN][1000 genomes]
rs11622135	0.87[ASN][1000 genomes]
rs11622535	0.81[AMR][1000 genomes]
rs11623756	0.81[AMR][1000 genomes]
rs11624166	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11626332	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626594	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11626769	0.85[AMR][1000 genomes]
rs11626778	0.81[AMR][1000 genomes]
rs11627100	0.82[AMR][1000 genomes]
rs11627417	0.82[AMR][1000 genomes]
rs11627565	0.81[AMR][1000 genomes]
rs11844492	0.82[AMR][1000 genomes]
rs11848769	0.87[ASN][1000 genomes]
rs11850946	0.87[ASN][1000 genomes]
rs11852208	0.87[ASN][1000 genomes]
rs12431490	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432558	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433779	0.86[ASN][1000 genomes]
rs12434751	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435554	0.87[ASN][1000 genomes]
rs12437276	0.87[ASN][1000 genomes]
rs12891164	0.82[AMR][1000 genomes]
rs1543391	0.82[AMR][1000 genomes]
rs17192558	0.87[ASN][1000 genomes]
rs17192586	0.87[ASN][1000 genomes]
rs17783094	0.85[AMR][1000 genomes]
rs17783124	0.81[AMR][1000 genomes]
rs17783160	0.82[AMR][1000 genomes]
rs17783304	0.87[ASN][1000 genomes]
rs181561	0.81[AMR][1000 genomes]
rs181562	0.81[AMR][1000 genomes]
rs181564	0.81[AMR][1000 genomes]
rs181565	0.81[AMR][1000 genomes]
rs181567	0.82[AMR][1000 genomes]
rs181570	0.82[AMR][1000 genomes]
rs181574	0.82[AMR][1000 genomes]
rs181576	0.82[AMR][1000 genomes]
rs1950767	0.90[EUR][1000 genomes]
rs1950769	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1956345	0.82[AMR][1000 genomes]
rs1956347	0.82[AMR][1000 genomes]
rs1956348	0.82[AMR][1000 genomes]
rs28373844	0.81[AMR][1000 genomes]
rs28604984	0.81[AMR][1000 genomes]
rs28623567	0.81[AMR][1000 genomes]
rs28649231	0.81[ASN][1000 genomes]
rs28713367	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28855496	0.91[EUR][1000 genomes]
rs34588410	0.87[ASN][1000 genomes]
rs34723132	0.87[ASN][1000 genomes]
rs34759521	0.93[ASN][1000 genomes]
rs35272075	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35803514	0.86[ASN][1000 genomes]
rs4284565	0.84[AMR][1000 genomes]
rs4902533	0.91[EUR][1000 genomes]
rs55867043	0.87[ASN][1000 genomes]
rs55999745	0.82[AMR][1000 genomes]
rs7142433	0.83[AMR][1000 genomes]
rs7145044	0.87[ASN][1000 genomes]
rs7149482	0.85[AMR][1000 genomes]
rs7150705	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150903	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151091	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7151495	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151917	0.87[ASN][1000 genomes]
rs7154635	0.81[AMR][1000 genomes]
rs7155985	0.87[ASN][1000 genomes]
rs7157288	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7159109	0.81[AMR][1000 genomes]
rs7159184	0.82[EUR][1000 genomes]
rs7159622	0.82[AMR][1000 genomes]
rs72723196	0.85[AMR][1000 genomes]
rs72725103	0.85[AMR][1000 genomes]
rs72725114	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72725127	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725141	0.87[ASN][1000 genomes]
rs72725149	0.87[ASN][1000 genomes]
rs72725151	0.87[ASN][1000 genomes]
rs72725153	0.87[ASN][1000 genomes]
rs72725156	0.87[ASN][1000 genomes]
rs72725157	0.87[ASN][1000 genomes]
rs72725159	0.87[ASN][1000 genomes]
rs72725165	0.87[ASN][1000 genomes]
rs764088	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003431	0.81[AMR][1000 genomes]
rs8009358	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8009455	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8012974	0.85[AMR][1000 genomes]
rs8017007	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8017013	0.82[AMR][1000 genomes]
rs8018709	0.81[AMR][1000 genomes]
rs932555	0.81[AMR][1000 genomes]
rs961700	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs986382	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68324600-68354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:68328000-68367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68331600-68357000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr14:68334200-68348200	Weak transcription	Lung	lung
5	chr14:68334600-68367600	Weak transcription	Primary B cells from cord blood	blood
6	chr14:68335200-68343400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:68335200-68348000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr14:68338000-68341400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr14:68341000-68342800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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