Variant report

Variant	rs1950767
Chromosome Location	chr14:68369712-68369713
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:71298054..71298720-chr14:68369217..68369735,2	MCF-7	breast:
2	chr14:68368254..68369915-chr14:69259568..69261082,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10129355	0.88[ASN][1000 genomes]
rs10129612	0.88[ASN][1000 genomes]
rs10130829	0.92[ASN][1000 genomes]
rs10132022	0.85[ASN][1000 genomes]
rs10133262	0.98[ASN][1000 genomes]
rs10136129	0.95[ASN][1000 genomes]
rs10136174	0.95[ASN][1000 genomes]
rs10136790	0.98[ASN][1000 genomes]
rs10139548	0.87[ASN][1000 genomes]
rs10140097	0.88[ASN][1000 genomes]
rs10140282	0.95[ASN][1000 genomes]
rs10143455	0.88[ASN][1000 genomes]
rs10143843	0.95[ASN][1000 genomes]
rs10144995	0.95[ASN][1000 genomes]
rs10148527	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1015023	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10151387	0.93[ASN][1000 genomes]
rs10467735	0.97[ASN][1000 genomes]
rs10873210	0.90[ASN][1000 genomes]
rs11158700	0.90[EUR][1000 genomes]
rs11158701	0.90[EUR][1000 genomes]
rs11158715	0.88[ASN][1000 genomes]
rs11622243	0.95[ASN][1000 genomes]
rs11622787	0.95[ASN][1000 genomes]
rs11624166	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11626280	0.98[ASN][1000 genomes]
rs11626332	0.88[EUR][1000 genomes]
rs11626594	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11844529	0.95[ASN][1000 genomes]
rs11846344	0.95[ASN][1000 genomes]
rs11850191	0.95[ASN][1000 genomes]
rs11852180	0.95[ASN][1000 genomes]
rs12100584	0.98[ASN][1000 genomes]
rs12431490	0.91[EUR][1000 genomes]
rs12431697	0.98[ASN][1000 genomes]
rs12432558	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12434751	0.91[EUR][1000 genomes]
rs12437178	0.95[ASN][1000 genomes]
rs13329056	0.95[ASN][1000 genomes]
rs17104764	0.98[ASN][1000 genomes]
rs17104776	0.92[ASN][1000 genomes]
rs17104800	0.98[ASN][1000 genomes]
rs1950769	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2009191	0.98[ASN][1000 genomes]
rs2093358	0.88[ASN][1000 genomes]
rs2208596	0.85[ASN][1000 genomes]
rs28444723	0.98[ASN][1000 genomes]
rs28474995	0.92[ASN][1000 genomes]
rs28488544	0.98[ASN][1000 genomes]
rs28509330	0.93[ASN][1000 genomes]
rs28713367	0.90[EUR][1000 genomes]
rs2877369	0.98[ASN][1000 genomes]
rs28855496	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4436722	0.98[ASN][1000 genomes]
rs4902533	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902535	0.98[ASN][1000 genomes]
rs4902536	0.98[ASN][1000 genomes]
rs4902538	0.98[ASN][1000 genomes]
rs4902539	0.98[ASN][1000 genomes]
rs4902540	0.98[ASN][1000 genomes]
rs4902544	0.88[ASN][1000 genomes]
rs57990032	0.85[ASN][1000 genomes]
rs58151429	0.98[ASN][1000 genomes]
rs60201005	0.95[ASN][1000 genomes]
rs60415085	0.93[ASN][1000 genomes]
rs6573800	0.95[ASN][1000 genomes]
rs6573801	0.98[ASN][1000 genomes]
rs6573805	0.88[ASN][1000 genomes]
rs7142112	0.98[ASN][1000 genomes]
rs7142210	0.98[ASN][1000 genomes]
rs7142860	0.98[ASN][1000 genomes]
rs7145771	0.98[ASN][1000 genomes]
rs7146354	0.98[ASN][1000 genomes]
rs7150705	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7150903	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7151091	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7151495	0.87[EUR][1000 genomes]
rs7154646	0.95[ASN][1000 genomes]
rs7155097	0.95[ASN][1000 genomes]
rs7155840	0.97[ASN][1000 genomes]
rs7157185	0.95[ASN][1000 genomes]
rs7157288	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7158544	0.88[ASN][1000 genomes]
rs7160115	0.98[ASN][1000 genomes]
rs72725127	0.91[EUR][1000 genomes]
rs764088	0.85[EUR][1000 genomes]
rs8006437	0.97[ASN][1000 genomes]
rs8009358	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8009455	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8013677	0.98[ASN][1000 genomes]
rs8016525	0.98[ASN][1000 genomes]
rs8017007	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8020795	0.88[ASN][1000 genomes]
rs9323501	0.98[ASN][1000 genomes]
rs961700	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9672142	0.95[ASN][1000 genomes]
rs986382	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68364200-68374000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:68365800-68374800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:68368000-68370600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:68368200-68370200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:68368200-68374600	Weak transcription	Ovary	ovary
6	chr14:68368400-68382200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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