Variant report

Variant	rs12100584
Chromosome Location	chr14:68379775-68379776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68377483..68380217-chr14:69257926..69260527,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 183 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:182)

rs_ID	r²[population]
rs10129355	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10129612	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10130829	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10132022	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10132711	0.88[JPT][hapmap]
rs10132828	0.84[JPT][hapmap]
rs10133262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133883	0.90[EUR][1000 genomes]
rs10135316	0.81[JPT][hapmap]
rs10136129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136174	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136868	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10139236	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10139386	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs10139548	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10140097	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10140282	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10143219	0.81[JPT][hapmap]
rs10143455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10143843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10143895	0.81[JPT][hapmap]
rs10144995	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10145884	0.81[JPT][hapmap]
rs10146719	0.81[JPT][hapmap]
rs10146831	0.88[JPT][hapmap]
rs10148527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10151115	0.82[EUR][1000 genomes]
rs10151123	0.81[JPT][hapmap]
rs10151317	0.81[JPT][hapmap]
rs10151387	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10450891	0.81[JPT][hapmap]
rs10467735	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10483805	0.80[CHB][hapmap]
rs1080956	0.82[EUR][1000 genomes]
rs1080957	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1080958	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs10873210	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158715	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158716	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs11158717	0.85[EUR][1000 genomes]
rs11158719	0.84[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs11622135	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs11622243	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11622787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11623355	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11623467	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs11623984	0.90[EUR][1000 genomes]
rs11624609	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs11626280	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11846344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11847628	0.80[CHB][hapmap]
rs11848187	0.86[EUR][1000 genomes]
rs11848769	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs11850191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11850946	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs11852180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11852208	0.87[EUR][1000 genomes]
rs12431697	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432681	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12435554	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12437043	0.86[CHB][hapmap]
rs12437178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437276	0.88[EUR][1000 genomes]
rs13329056	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1548264	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs1548265	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap]
rs17104764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104774	0.81[JPT][hapmap]
rs17104776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17104783	0.88[JPT][hapmap]
rs17104793	0.81[JPT][hapmap]
rs17104799	0.81[JPT][hapmap]
rs17104800	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104824	0.81[JPT][hapmap]
rs17104827	0.81[JPT][hapmap]
rs17104829	0.81[JPT][hapmap]
rs17104889	0.84[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap]
rs17104908	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs17192558	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs17192586	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs17783304	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs181572	0.80[CHB][hapmap]
rs181575	0.80[CHB][hapmap]
rs1950767	0.98[ASN][1000 genomes]
rs1956346	0.80[CHB][hapmap]
rs1980654	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs1980655	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.90[EUR][1000 genomes]
rs2009191	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038565	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs2093358	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2208596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2235962	0.80[CHB][hapmap]
rs2235963	0.80[CHB][hapmap]
rs2235965	0.80[CHB][hapmap]
rs2295108	0.80[CHB][hapmap]
rs28444723	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28470365	0.82[EUR][1000 genomes]
rs28474827	0.83[EUR][1000 genomes]
rs28474995	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28488544	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28509330	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2877369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28855496	0.98[ASN][1000 genomes]
rs34588410	0.88[EUR][1000 genomes]
rs34723132	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs431649	0.80[CHB][hapmap]
rs4436722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4569184	0.80[CHB][hapmap]
rs4899231	0.82[EUR][1000 genomes]
rs4899232	0.81[EUR][1000 genomes]
rs4902533	0.98[ASN][1000 genomes]
rs4902535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902539	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902544	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902545	0.83[EUR][1000 genomes]
rs57990032	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58151429	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60201005	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60415085	0.95[ASN][1000 genomes]
rs60471554	0.90[EUR][1000 genomes]
rs6573800	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573801	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573805	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573814	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67566613	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7142112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142860	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145044	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7145771	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149460	0.81[JPT][hapmap]
rs7150168	0.81[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes]
rs7151917	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7154014	0.84[EUR][1000 genomes]
rs7154646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7154725	0.81[JPT][hapmap]
rs7155097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7155840	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7155985	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7157185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7157550	0.81[JPT][hapmap]
rs7157720	0.81[JPT][hapmap]
rs7158544	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7160115	0.85[CEU][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160196	0.80[CHB][hapmap]
rs7161069	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72725138	0.81[EUR][1000 genomes]
rs72725141	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72725149	0.89[EUR][1000 genomes]
rs72725151	0.88[EUR][1000 genomes]
rs72725153	0.88[EUR][1000 genomes]
rs72725156	0.84[EUR][1000 genomes]
rs72725157	0.88[EUR][1000 genomes]
rs72725159	0.84[EUR][1000 genomes]
rs72725165	0.87[EUR][1000 genomes]
rs72725168	0.88[EUR][1000 genomes]
rs72725170	0.88[EUR][1000 genomes]
rs72725172	0.84[EUR][1000 genomes]
rs72725174	0.81[EUR][1000 genomes]
rs8006089	0.80[CHB][hapmap]
rs8006175	0.81[JPT][hapmap]
rs8006437	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8006492	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8011621	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs8013677	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014000	0.84[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]
rs8015128	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs8016525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020795	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8021404	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs8022206	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs9323501	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652362	0.81[JPT][hapmap]
rs9652363	0.81[JPT][hapmap]
rs9652364	0.81[JPT][hapmap]
rs9672142	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68368400-68382200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68375600-68385400	Weak transcription	Fetal Kidney	kidney
3	chr14:68378200-68382200	Weak transcription	Fetal Stomach	stomach
4	chr14:68378600-68380600	Weak transcription	Ovary	ovary
5	chr14:68378600-68382600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:68378600-68385400	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links