Variant report

Variant	rs7145044
Chromosome Location	chr14:68389043-68389044
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68383851..68386785-chr14:68386997..68389366,2	K562	blood:
2	chr14:68380228..68384149-chr14:68387361..68390165,3	MCF-7	breast:

Extended variants
information (count: 184 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:183)

rs_ID	r²[population]
rs10129355	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10129612	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs10130829	0.89[EUR][1000 genomes]
rs10132022	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs10133262	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10133883	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10136129	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs10136174	0.84[EUR][1000 genomes]
rs10136790	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10136868	0.83[EUR][1000 genomes]
rs10139548	0.88[EUR][1000 genomes]
rs10140097	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs10140282	0.89[EUR][1000 genomes]
rs10141638	1.00[JPT][hapmap]
rs10143455	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs10143843	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs10144995	0.84[EUR][1000 genomes]
rs1033686	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs1040598	1.00[JPT][hapmap]
rs10467735	0.89[EUR][1000 genomes]
rs1080958	0.83[CEU][hapmap]
rs11158694	1.00[JPT][hapmap]
rs11158700	0.87[ASN][1000 genomes]
rs11158701	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11158715	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs11158716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11158718	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11621019	1.00[JPT][hapmap]
rs11621638	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs11622135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11622243	0.89[EUR][1000 genomes]
rs11622787	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs11623355	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs11623984	0.84[EUR][1000 genomes]
rs11624484	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11624609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11626280	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11626332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11626769	1.00[JPT][hapmap]
rs11629073	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11844529	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs11846344	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs11848187	0.83[EUR][1000 genomes]
rs11848769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11850191	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs11850946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11852180	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11852208	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12100584	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12431490	0.87[ASN][1000 genomes]
rs12431697	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs12432558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12432681	0.84[EUR][1000 genomes]
rs12433710	1.00[JPT][hapmap]
rs12433779	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12434751	0.87[ASN][1000 genomes]
rs12435554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437178	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12437276	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12437441	1.00[JPT][hapmap]
rs12891164	1.00[JPT][hapmap]
rs12893157	1.00[JPT][hapmap]
rs13329056	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs1543391	1.00[JPT][hapmap]
rs17104764	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17104776	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs17104800	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs17104908	0.82[CEU][hapmap]
rs17192558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17192586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17783094	1.00[JPT][hapmap]
rs17783304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1810523	1.00[JPT][hapmap]
rs181561	1.00[JPT][hapmap]
rs181564	1.00[JPT][hapmap]
rs181565	1.00[JPT][hapmap]
rs181570	1.00[JPT][hapmap]
rs181576	1.00[JPT][hapmap]
rs1980654	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs1980655	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2009191	0.84[EUR][1000 genomes]
rs2038565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2093358	0.83[EUR][1000 genomes]
rs2208596	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2235967	1.00[JPT][hapmap]
rs2295106	1.00[JPT][hapmap]
rs2295107	1.00[JPT][hapmap]
rs28444723	0.84[EUR][1000 genomes]
rs28470365	0.84[EUR][1000 genomes]
rs28474827	0.81[EUR][1000 genomes]
rs28474995	0.85[EUR][1000 genomes]
rs28488544	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28509330	0.89[EUR][1000 genomes]
rs28649231	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28713367	0.87[ASN][1000 genomes]
rs2874132	1.00[JPT][hapmap]
rs2874133	1.00[JPT][hapmap]
rs2877369	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs34588410	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34723132	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34759521	0.80[ASN][1000 genomes]
rs35803514	0.86[ASN][1000 genomes]
rs372143	0.82[CEU][hapmap]
rs373918	0.82[CEU][hapmap]
rs401021	0.82[CEU][hapmap]
rs411547	0.83[CEU][hapmap]
rs4143685	1.00[JPT][hapmap]
rs431649	0.82[CEU][hapmap]
rs435620	0.81[CEU][hapmap]
rs4436722	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs448445	0.83[CEU][hapmap]
rs4902535	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902536	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902538	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902539	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902540	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902544	0.88[EUR][1000 genomes]
rs57990032	0.88[EUR][1000 genomes]
rs58151429	0.84[EUR][1000 genomes]
rs60201005	0.88[EUR][1000 genomes]
rs60471554	0.84[EUR][1000 genomes]
rs6573800	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6573801	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6573805	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs6573814	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs7141160	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs7141450	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs7142112	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7142210	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7142860	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7143196	1.00[JPT][hapmap]
rs7143496	1.00[JPT][hapmap]
rs7145771	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7146354	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7149482	1.00[JPT][hapmap]
rs7150705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7150903	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7151495	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7151917	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154014	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7154646	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs7155097	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs7155840	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs7155985	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157185	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs7158544	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs7159622	1.00[JPT][hapmap]
rs7160115	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7161069	0.84[EUR][1000 genomes]
rs72725127	0.87[ASN][1000 genomes]
rs72725138	0.90[EUR][1000 genomes]
rs72725141	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725149	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725151	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725153	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725154	0.87[EUR][1000 genomes]
rs72725156	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725157	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725158	0.87[EUR][1000 genomes]
rs72725159	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725160	0.87[EUR][1000 genomes]
rs72725163	0.87[EUR][1000 genomes]
rs72725165	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725168	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72725170	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72725172	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72725173	0.82[EUR][1000 genomes]
rs72725174	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72725185	0.82[AFR][1000 genomes]
rs72725187	0.82[AFR][1000 genomes]
rs72725188	0.82[AFR][1000 genomes]
rs764088	0.87[ASN][1000 genomes]
rs8006437	0.89[EUR][1000 genomes]
rs8006492	0.84[EUR][1000 genomes]
rs8011120	1.00[JPT][hapmap]
rs8013677	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8015128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8016525	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8020795	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8021404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8022206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9323501	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs9672142	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68386200-68392400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr14:68386400-68392400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:68386400-68392600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:68386600-68390000	Weak transcription	Fetal Kidney	kidney
5	chr14:68386600-68391200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:68386600-68391800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:68386600-68399800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:68389000-68392400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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