Variant report

Variant	rs72725160
Chromosome Location	chr14:68477389-68477390
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68476385..68478985-chr14:69260389..69262705,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10129355	0.80[EUR][1000 genomes]
rs10140097	0.80[EUR][1000 genomes]
rs1033686	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11158716	0.88[EUR][1000 genomes]
rs11621638	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622135	0.90[EUR][1000 genomes]
rs11622787	0.80[EUR][1000 genomes]
rs11624609	0.89[EUR][1000 genomes]
rs11848187	0.81[EUR][1000 genomes]
rs11848769	0.90[EUR][1000 genomes]
rs11850946	0.89[EUR][1000 genomes]
rs11852208	0.89[EUR][1000 genomes]
rs12435554	0.87[EUR][1000 genomes]
rs12437178	0.80[EUR][1000 genomes]
rs12437276	0.90[EUR][1000 genomes]
rs1314911	1.00[ASN][1000 genomes]
rs1314916	1.00[ASN][1000 genomes]
rs13329056	0.80[EUR][1000 genomes]
rs17192558	0.89[EUR][1000 genomes]
rs17192586	0.88[EUR][1000 genomes]
rs17783304	0.89[EUR][1000 genomes]
rs1952246	1.00[ASN][1000 genomes]
rs1958115	1.00[ASN][1000 genomes]
rs2038565	0.85[EUR][1000 genomes]
rs2208596	0.80[EUR][1000 genomes]
rs2588827	1.00[ASN][1000 genomes]
rs2767368	1.00[ASN][1000 genomes]
rs2767382	1.00[ASN][1000 genomes]
rs34558039	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34588410	0.90[EUR][1000 genomes]
rs34723132	0.87[EUR][1000 genomes]
rs4902544	0.80[EUR][1000 genomes]
rs57990032	0.80[EUR][1000 genomes]
rs60201005	0.80[EUR][1000 genomes]
rs6573805	0.80[EUR][1000 genomes]
rs7145044	0.87[EUR][1000 genomes]
rs7151917	0.87[EUR][1000 genomes]
rs7154014	0.85[EUR][1000 genomes]
rs7155985	0.87[EUR][1000 genomes]
rs7158544	0.80[EUR][1000 genomes]
rs72725138	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72725141	0.87[EUR][1000 genomes]
rs72725149	0.89[EUR][1000 genomes]
rs72725151	0.90[EUR][1000 genomes]
rs72725153	0.90[EUR][1000 genomes]
rs72725154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725156	0.94[EUR][1000 genomes]
rs72725157	0.90[EUR][1000 genomes]
rs72725158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725159	0.94[EUR][1000 genomes]
rs72725163	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725165	0.89[EUR][1000 genomes]
rs72725168	0.90[EUR][1000 genomes]
rs72725170	0.90[EUR][1000 genomes]
rs72725172	0.85[EUR][1000 genomes]
rs72725173	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725174	0.89[EUR][1000 genomes]
rs8015128	0.85[EUR][1000 genomes]
rs8021404	0.85[EUR][1000 genomes]
rs8022206	0.85[EUR][1000 genomes]
rs9672142	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68468000-68478200	Weak transcription	Fetal Lung	lung
2	chr14:68468400-68478400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:68472600-68477800	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:68476000-68478200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr14:68476200-68477800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:68476200-68478000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:68476400-68477800	Weak transcription	Hela-S3	cervix
8	chr14:68476600-68477600	Enhancers	A549	lung
9	chr14:68476600-68484200	Enhancers	Rectal Smooth Muscle	rectum
10	chr14:68477000-68477400	Weak transcription	Stomach Mucosa	stomach

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