Variant report

Variant	rs12435554
Chromosome Location	chr14:68416430-68416431
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68408062..68409721-chr14:68415116..68416727,2	MCF-7	breast:

Extended variants
information (count: 174 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:173)

rs_ID	r²[population]
rs10129355	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10129612	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs10130829	0.89[EUR][1000 genomes]
rs10132022	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs10133262	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10133883	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10136129	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs10136174	0.84[EUR][1000 genomes]
rs10136790	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10136868	0.83[EUR][1000 genomes]
rs10139548	0.88[EUR][1000 genomes]
rs10140097	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs10140282	0.89[EUR][1000 genomes]
rs10141638	1.00[JPT][hapmap]
rs10143455	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs10143843	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs10144995	0.84[EUR][1000 genomes]
rs1033686	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs1040598	1.00[JPT][hapmap]
rs10467735	0.89[EUR][1000 genomes]
rs11158694	1.00[JPT][hapmap]
rs11158700	0.87[ASN][1000 genomes]
rs11158701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11158715	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs11158716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11158718	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11621019	1.00[JPT][hapmap]
rs11621638	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs11622135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11622243	0.89[EUR][1000 genomes]
rs11622787	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs11623355	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs11623984	0.84[EUR][1000 genomes]
rs11624484	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11624609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11626280	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11626332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11626769	1.00[JPT][hapmap]
rs11629073	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11844529	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs11846344	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs11848187	0.83[EUR][1000 genomes]
rs11848769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11850191	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs11850946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11852180	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11852208	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12100584	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12431490	0.87[ASN][1000 genomes]
rs12431697	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs12432558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12432681	0.84[EUR][1000 genomes]
rs12433710	1.00[JPT][hapmap]
rs12433779	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12434751	0.87[ASN][1000 genomes]
rs12437178	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12437276	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12437441	1.00[JPT][hapmap]
rs12891164	1.00[JPT][hapmap]
rs12893157	1.00[JPT][hapmap]
rs13329056	0.88[EUR][1000 genomes]
rs1543391	1.00[JPT][hapmap]
rs17104764	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17104776	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs17104800	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs17192558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17192586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17783094	1.00[JPT][hapmap]
rs17783304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1810523	1.00[JPT][hapmap]
rs181561	1.00[JPT][hapmap]
rs181564	1.00[JPT][hapmap]
rs181565	1.00[JPT][hapmap]
rs181570	1.00[JPT][hapmap]
rs181576	1.00[JPT][hapmap]
rs1980654	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs1980655	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs2009191	0.84[EUR][1000 genomes]
rs2038565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2093358	0.83[EUR][1000 genomes]
rs2208596	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2235967	1.00[JPT][hapmap]
rs2295106	1.00[JPT][hapmap]
rs2295107	1.00[JPT][hapmap]
rs28444723	0.84[EUR][1000 genomes]
rs28470365	0.84[EUR][1000 genomes]
rs28474827	0.81[EUR][1000 genomes]
rs28474995	0.85[EUR][1000 genomes]
rs28488544	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28509330	0.89[EUR][1000 genomes]
rs28649231	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28713367	0.87[ASN][1000 genomes]
rs2874132	1.00[JPT][hapmap]
rs2877369	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs34588410	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34723132	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34759521	0.80[ASN][1000 genomes]
rs35803514	0.86[ASN][1000 genomes]
rs4143685	1.00[JPT][hapmap]
rs4436722	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs4902535	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902536	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902538	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902539	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902540	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902544	0.88[EUR][1000 genomes]
rs57990032	0.88[EUR][1000 genomes]
rs58151429	0.84[EUR][1000 genomes]
rs60201005	0.88[EUR][1000 genomes]
rs60471554	0.84[EUR][1000 genomes]
rs6573800	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6573801	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6573805	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs6573814	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs7141160	1.00[JPT][hapmap]
rs7141450	1.00[JPT][hapmap]
rs7142112	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7142210	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7142433	1.00[JPT][hapmap]
rs7142860	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7143196	1.00[JPT][hapmap]
rs7143496	1.00[JPT][hapmap]
rs7145044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145771	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7146354	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7149482	1.00[JPT][hapmap]
rs7150705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7150903	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7151495	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7151917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154014	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7154646	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs7155097	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs7155840	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs7155985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157185	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs7158544	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs7159622	1.00[JPT][hapmap]
rs7160115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7161069	0.84[EUR][1000 genomes]
rs72725127	0.87[ASN][1000 genomes]
rs72725138	0.90[EUR][1000 genomes]
rs72725141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725149	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725151	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725153	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725154	0.87[EUR][1000 genomes]
rs72725156	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725157	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725158	0.87[EUR][1000 genomes]
rs72725159	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725160	0.87[EUR][1000 genomes]
rs72725163	0.87[EUR][1000 genomes]
rs72725165	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725168	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72725170	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72725172	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72725173	0.82[EUR][1000 genomes]
rs72725174	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72725185	0.85[AFR][1000 genomes]
rs72725187	0.85[AFR][1000 genomes]
rs72725188	0.85[AFR][1000 genomes]
rs764088	0.87[ASN][1000 genomes]
rs8006437	0.89[EUR][1000 genomes]
rs8006492	0.84[EUR][1000 genomes]
rs8013677	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8015128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8016525	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8020795	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8021404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8022206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9323501	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs9672142	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68420200	Weak transcription	Ovary	ovary
2	chr14:68408600-68430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
4	chr14:68409400-68416800	Weak transcription	Aorta	Aorta
5	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:68409600-68430600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:68412000-68421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:68412000-68423800	Weak transcription	Stomach Mucosa	stomach
9	chr14:68412000-68431000	Weak transcription	Small Intestine	intestine
10	chr14:68414600-68416600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr14:68416200-68417200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:68416200-68417200	ZNF genes & repeats	Fetal Lung	lung

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