Variant report

Variant	rs11624484
Chromosome Location	chr14:68550001-68550002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68546000..68548241-chr14:68549428..68552424,3	MCF-7	breast:
2	chr14:68549045..68550590-chr14:68627061..68629304,2	MCF-7	breast:
3	chr14:68549897..68552411-chr14:68713293..68716629,3	MCF-7	breast:
4	chr14:68549804..68551965-chr14:68607068..68608947,2	MCF-7	breast:
5	chr14:68549698..68551582-chr14:68946778..68949306,2	MCF-7	breast:
6	chr14:68546114..68557712-chr14:68603959..68613316,23	MCF-7	breast:
7	chr14:68549312..68551959-chr14:68656938..68660487,4	MCF-7	breast:
8	chr14:68429320..68431742-chr14:68549639..68551221,2	MCF-7	breast:
9	chr14:68409337..68410924-chr14:68547363..68550057,2	MCF-7	breast:
10	chr14:68549588..68551587-chr14:68658498..68660116,2	MCF-7	breast:
11	chr14:68548399..68550785-chr14:68554801..68556437,2	K562	blood:
12	chr14:68411140..68412950-chr14:68548883..68551088,2	MCF-7	breast:

No data

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10137233	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10139236	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10139386	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10140420	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10140493	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10151115	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1080956	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1080957	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1080958	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11158716	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11158718	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158719	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11622135	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11623467	0.83[EUR][1000 genomes]
rs11624209	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11624609	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11628745	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11629073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848769	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11850946	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11852208	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12432193	0.86[ASN][1000 genomes]
rs12432558	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12433779	1.00[JPT][hapmap]
rs12435554	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12436203	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437276	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12437441	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1548264	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1548265	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17104889	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17104908	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs17192558	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17192586	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17783304	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1810639	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1951410	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2038565	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588807	0.83[CEU][hapmap]
rs2588823	0.84[CEU][hapmap]
rs2588830	0.89[CEU][hapmap]
rs2588831	0.90[CEU][hapmap]
rs2588832	0.89[CEU][hapmap]
rs2588833	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs2588834	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2767365	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs2767366	0.85[CEU][hapmap]
rs28649231	0.83[AFR][1000 genomes]
rs33949561	0.81[EUR][1000 genomes]
rs34558039	0.89[EUR][1000 genomes]
rs34588410	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34723132	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs35517486	0.86[ASN][1000 genomes]
rs365934	0.84[EUR][1000 genomes]
rs372143	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs373918	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs378408	0.84[EUR][1000 genomes]
rs401021	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs411547	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs419450	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs431649	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs435620	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs437585	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs440627	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs445921	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs448445	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4899231	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4899232	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4902545	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4902547	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57069083	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67566613	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68139749	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7141160	0.94[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7141450	0.94[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7145044	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7150168	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7150705	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7150903	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7151235	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs7151917	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7154014	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155985	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7160115	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs72725141	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72725149	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725151	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725153	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725156	0.87[ASN][1000 genomes]
rs72725157	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725159	0.87[ASN][1000 genomes]
rs72725165	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725168	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725170	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725172	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725174	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72725183	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725186	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725190	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8011621	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8014000	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8014524	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8015128	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021404	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022206	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323502	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68552400	Weak transcription	Ovary	ovary
2	chr14:68542200-68555000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:68542600-68551000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:68542600-68552400	Weak transcription	Lung	lung
5	chr14:68542800-68552000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:68542800-68552400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:68542800-68555400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:68544000-68550600	Weak transcription	Fetal Intestine Small	intestine
9	chr14:68544000-68555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:68545800-68555800	Weak transcription	Small Intestine	intestine
11	chr14:68546200-68554800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:68547000-68552400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:68547200-68551000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:68547200-68567400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:68547400-68551400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr14:68547400-68551800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr14:68547400-68552200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:68547400-68552200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr14:68547400-68555000	Weak transcription	Psoas Muscle	Psoas
20	chr14:68547600-68554000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr14:68547800-68551800	Weak transcription	HepG2	liver
22	chr14:68548400-68552200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr14:68548400-68552800	Weak transcription	Colon Smooth Muscle	Colon
24	chr14:68548600-68550400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr14:68548600-68551000	Weak transcription	A549	lung
26	chr14:68548600-68551200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:68548600-68551600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr14:68548600-68552200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:68548600-68552600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:68549200-68554000	Enhancers	Fetal Lung	lung
31	chr14:68549200-68555400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr14:68549600-68550200	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr14:68549600-68555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:68550000-68554800	Weak transcription	NHEK	skin

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