Variant report

Variant	rs1951410
Chromosome Location	chr14:68568302-68568303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68559348..68562208-chr14:68567307..68571159,3	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1022978	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11158718	0.89[EUR][1000 genomes]
rs11624484	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11629073	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12436203	0.85[EUR][1000 genomes]
rs12437043	0.90[EUR][1000 genomes]
rs12894297	0.87[AMR][1000 genomes]
rs1467673	0.86[AMR][1000 genomes]
rs1555945	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17104908	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1952245	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1952246	0.83[EUR][1000 genomes]
rs1958111	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1958113	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1958115	0.83[EUR][1000 genomes]
rs1958116	0.84[AMR][1000 genomes]
rs1980850	0.87[AMR][1000 genomes]
rs2038979	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2243905	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2254173	0.89[AMR][1000 genomes]
rs2478777	0.81[AMR][1000 genomes]
rs2588806	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2588807	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2588808	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2588814	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2588815	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2588816	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2588818	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2588819	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2588820	0.87[AMR][1000 genomes]
rs2588821	0.86[AMR][1000 genomes]
rs2588823	0.86[AMR][1000 genomes]
rs2588824	0.87[AMR][1000 genomes]
rs2588825	0.86[AMR][1000 genomes]
rs2588826	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2588827	0.84[EUR][1000 genomes]
rs2588828	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2588829	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2588830	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2588831	0.85[EUR][1000 genomes]
rs2588832	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2588833	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2588834	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2767365	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2767366	0.87[EUR][1000 genomes]
rs2767367	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2767368	0.88[EUR][1000 genomes]
rs2767379	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2767382	0.82[EUR][1000 genomes]
rs2767383	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2767384	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34558039	0.83[EUR][1000 genomes]
rs365934	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs372143	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs373918	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs378408	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs401021	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs411547	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs419450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs424032	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs431649	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs435620	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs437585	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs440627	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs445921	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs448445	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141160	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141450	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151235	0.82[EUR][1000 genomes]
rs7156822	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72725183	0.85[EUR][1000 genomes]
rs72725185	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72725186	0.89[EUR][1000 genomes]
rs72725187	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72725188	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8014524	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs959039	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68556400-68568400	Weak transcription	Primary T cells from cord blood	blood
2	chr14:68562200-68568400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:68565600-68568600	Enhancers	Colon Smooth Muscle	Colon
4	chr14:68566400-68570000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:68566600-68570800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:68567400-68568400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:68567400-68569000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:68567400-68569200	ZNF genes & repeats	Fetal Muscle Leg	muscle
9	chr14:68567400-68569200	ZNF genes & repeats	Thymus	Thymus
10	chr14:68567400-68569200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr14:68567600-68569800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr14:68567600-68570000	ZNF genes & repeats	Fetal Intestine Small	intestine
13	chr14:68567800-68569000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr14:68567800-68569000	ZNF genes & repeats	Fetal Lung	lung
15	chr14:68567800-68569200	ZNF genes & repeats	Dnd41	blood
16	chr14:68568000-68569000	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr14:68568000-68569200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:68568000-68569200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:68568200-68569000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:68568200-68569400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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