Variant report

Variant	rs445921
Chromosome Location	chr14:68573642-68573643
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68569854..68573880-chr14:68602556..68607160,7	MCF-7	breast:
2	chr14:68569098..68575378-chr14:68600721..68608879,10	MCF-7	breast:

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs1022978	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1028842	0.86[ASN][1000 genomes]
rs11158718	0.89[EUR][1000 genomes]
rs11624484	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11629073	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12436203	0.85[EUR][1000 genomes]
rs12437043	0.90[EUR][1000 genomes]
rs1274637	0.86[ASN][1000 genomes]
rs1274638	0.86[ASN][1000 genomes]
rs1274639	0.86[ASN][1000 genomes]
rs1274640	0.86[ASN][1000 genomes]
rs1274641	0.86[ASN][1000 genomes]
rs1274642	0.86[ASN][1000 genomes]
rs1274643	0.86[ASN][1000 genomes]
rs1274644	0.86[ASN][1000 genomes]
rs1274645	0.86[ASN][1000 genomes]
rs1274646	0.86[ASN][1000 genomes]
rs1274647	0.86[ASN][1000 genomes]
rs1274648	0.86[ASN][1000 genomes]
rs1274649	0.86[ASN][1000 genomes]
rs1274650	0.86[ASN][1000 genomes]
rs1274651	0.86[ASN][1000 genomes]
rs1274652	0.86[ASN][1000 genomes]
rs1274653	0.86[ASN][1000 genomes]
rs1274654	0.86[ASN][1000 genomes]
rs1274655	0.86[ASN][1000 genomes]
rs1274656	0.86[ASN][1000 genomes]
rs1274657	0.86[ASN][1000 genomes]
rs1274658	0.86[ASN][1000 genomes]
rs1274659	0.86[ASN][1000 genomes]
rs1274661	0.86[ASN][1000 genomes]
rs12894297	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1295780	0.86[ASN][1000 genomes]
rs1295781	0.86[ASN][1000 genomes]
rs1295782	0.86[ASN][1000 genomes]
rs1296527	0.86[ASN][1000 genomes]
rs1298340	0.86[ASN][1000 genomes]
rs1299581	0.86[ASN][1000 genomes]
rs1467673	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1536455	0.86[ASN][1000 genomes]
rs1555945	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17104908	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1744947	0.86[ASN][1000 genomes]
rs1744949	0.86[ASN][1000 genomes]
rs1751381	0.86[ASN][1000 genomes]
rs1751382	0.86[ASN][1000 genomes]
rs1951410	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1952245	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1952246	0.83[EUR][1000 genomes]
rs1958111	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1958113	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1958115	0.83[EUR][1000 genomes]
rs1958116	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1980850	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2038979	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2243905	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2254173	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2255767	0.86[ASN][1000 genomes]
rs2478777	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2588806	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2588807	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2588808	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2588809	0.86[ASN][1000 genomes]
rs2588814	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2588815	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2588816	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2588818	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2588819	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2588820	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2588821	0.88[AMR][1000 genomes]
rs2588823	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2588824	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2588825	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2588826	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2588827	0.84[EUR][1000 genomes]
rs2588828	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2588829	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2588830	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2588831	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2588832	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2588833	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2588834	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2767365	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2767366	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2767367	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2767368	0.88[EUR][1000 genomes]
rs2767377	0.86[ASN][1000 genomes]
rs2767378	0.86[ASN][1000 genomes]
rs2767379	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767382	0.82[EUR][1000 genomes]
rs2767383	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767384	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34558039	0.83[EUR][1000 genomes]
rs35701137	0.85[ASN][1000 genomes]
rs365934	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs372143	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs373918	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs378408	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs401021	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs411547	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs419450	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs424032	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs431649	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs435620	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs437585	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs440627	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs448445	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141160	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141450	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151235	0.82[EUR][1000 genomes]
rs7156822	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs725453	0.86[ASN][1000 genomes]
rs72725183	0.85[EUR][1000 genomes]
rs72725185	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72725186	0.89[EUR][1000 genomes]
rs72725187	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72725188	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8014524	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs959039	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68569000-68576000	Weak transcription	Adipose Nuclei	Adipose
2	chr14:68569000-68578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:68569200-68575800	Weak transcription	Primary T cells from cord blood	blood
4	chr14:68569200-68579200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68569400-68574600	Enhancers	Rectal Smooth Muscle	rectum
6	chr14:68569400-68576200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:68569600-68574000	Enhancers	Colon Smooth Muscle	Colon
8	chr14:68570400-68573800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:68570600-68573800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr14:68570600-68573800	Enhancers	NHEK	skin
11	chr14:68570800-68573800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr14:68571000-68574000	Enhancers	Fetal Lung	lung
13	chr14:68571400-68576200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:68571600-68576000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:68571600-68576000	Weak transcription	A549	lung
16	chr14:68571600-68577400	Weak transcription	Fetal Kidney	kidney
17	chr14:68571800-68575200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:68571800-68575200	Weak transcription	NHDF-Ad	bronchial
19	chr14:68571800-68575800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:68571800-68576000	Weak transcription	Osteobl	bone
21	chr14:68571800-68580200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr14:68572000-68575800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:68572000-68576000	Weak transcription	NHLF	lung
24	chr14:68572000-68580200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:68572200-68575600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:68572800-68575800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:68573000-68575800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:68573200-68573800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr14:68573200-68573800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:68573400-68575800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:68573400-68576200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr14:68573600-68576000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr14:68573600-68579400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr14:68573600-68580200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links