Variant report

Variant	rs11629073
Chromosome Location	chr14:68536295-68536296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68524998..68527629-chr14:68533348..68536338,2	MCF-7	breast:

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10133883	0.80[EUR][1000 genomes]
rs10137233	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10139236	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10139386	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10140420	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10140493	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10151115	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1080956	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1080957	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1080958	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11158716	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11158718	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158719	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11622135	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11623355	0.80[EUR][1000 genomes]
rs11623984	0.80[EUR][1000 genomes]
rs11624209	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11624484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624609	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11628745	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11848769	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11850946	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11852208	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12432193	0.86[ASN][1000 genomes]
rs12432681	0.80[EUR][1000 genomes]
rs12435554	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12436203	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437276	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12437441	0.86[ASN][1000 genomes]
rs1548264	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1548265	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17104889	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17104908	0.81[EUR][1000 genomes]
rs17192558	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17192586	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17783304	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1810639	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1951410	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1980654	0.80[EUR][1000 genomes]
rs1980655	0.80[EUR][1000 genomes]
rs2038565	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588834	0.85[AMR][1000 genomes]
rs2767365	0.82[AMR][1000 genomes]
rs28470365	0.83[EUR][1000 genomes]
rs28649231	0.83[AFR][1000 genomes]
rs34558039	0.85[EUR][1000 genomes]
rs34588410	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34723132	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35517486	0.86[ASN][1000 genomes]
rs365934	0.81[EUR][1000 genomes]
rs372143	0.81[EUR][1000 genomes]
rs373918	0.81[EUR][1000 genomes]
rs378408	0.81[EUR][1000 genomes]
rs401021	0.81[EUR][1000 genomes]
rs411547	0.81[EUR][1000 genomes]
rs419450	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs431649	0.81[EUR][1000 genomes]
rs435620	0.81[EUR][1000 genomes]
rs440627	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs445921	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs448445	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4899231	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4899232	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4902545	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4902547	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57069083	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60471554	0.80[EUR][1000 genomes]
rs6573814	0.80[EUR][1000 genomes]
rs67566613	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68139749	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7141160	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7141450	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7145044	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7150168	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7151235	0.82[EUR][1000 genomes]
rs7151917	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7154014	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155985	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7161069	0.80[EUR][1000 genomes]
rs72725141	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72725149	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725151	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725153	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725156	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725157	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725159	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725165	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725168	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725170	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725172	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725174	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72725183	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725186	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725190	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8006492	0.80[EUR][1000 genomes]
rs8011621	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8014000	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8014524	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8015128	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021404	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022206	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68544000	Weak transcription	Aorta	Aorta
2	chr14:68532400-68552400	Weak transcription	Ovary	ovary
3	chr14:68536200-68538200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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