Variant report

Variant	rs7141450
Chromosome Location	chr14:68563219-68563220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68563027..68566553-chr14:68604012..68608205,4	MCF-7	breast:
2	chr14:68561716..68564326-chr14:68711214..68713015,2	MCF-7	breast:

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs1022978	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1080958	0.83[CEU][hapmap]
rs11158716	1.00[JPT][hapmap]
rs11158718	0.88[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs11622135	1.00[JPT][hapmap]
rs11624484	0.94[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11629073	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11848769	1.00[JPT][hapmap]
rs11850946	1.00[JPT][hapmap]
rs12433779	1.00[JPT][hapmap]
rs12435554	1.00[JPT][hapmap]
rs12436203	0.85[EUR][1000 genomes]
rs12437043	0.90[EUR][1000 genomes]
rs12437441	1.00[JPT][hapmap]
rs1274637	1.00[CHB][hapmap]
rs1274638	1.00[CHB][hapmap]
rs1274639	1.00[CHB][hapmap]
rs1274640	1.00[CHB][hapmap]
rs1274643	1.00[CHB][hapmap]
rs1274645	1.00[CHB][hapmap]
rs1274646	1.00[CHB][hapmap]
rs1274650	1.00[CHB][hapmap]
rs1274651	1.00[CHB][hapmap]
rs1274652	1.00[CHB][hapmap]
rs1274655	1.00[CHB][hapmap]
rs1274656	1.00[CHB][hapmap]
rs1274657	1.00[CHB][hapmap]
rs1274658	1.00[CHB][hapmap]
rs1274659	1.00[CHB][hapmap]
rs12894297	0.86[AMR][1000 genomes]
rs1290939	1.00[CHB][hapmap]
rs1295780	1.00[CHB][hapmap]
rs1295782	1.00[CHB][hapmap]
rs1296527	1.00[CHB][hapmap]
rs1298340	1.00[CHB][hapmap]
rs1314912	1.00[CHB][hapmap]
rs1314913	1.00[CHB][hapmap]
rs1314914	1.00[CHB][hapmap]
rs1314915	1.00[CHB][hapmap]
rs1314918	1.00[CHB][hapmap]
rs1315984	1.00[CHB][hapmap]
rs1316014	1.00[CHB][hapmap]
rs1316118	1.00[CHB][hapmap]
rs1316170	1.00[CHB][hapmap]
rs1467673	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs1555944	0.82[CEU][hapmap]
rs1555945	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17104908	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17192558	1.00[JPT][hapmap]
rs17192586	1.00[JPT][hapmap]
rs1744947	1.00[CHB][hapmap]
rs1744949	1.00[CHB][hapmap]
rs1744959	1.00[CHB][hapmap]
rs1751381	1.00[CHB][hapmap]
rs1751382	1.00[CHB][hapmap]
rs17783304	1.00[JPT][hapmap]
rs1951410	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1951631	1.00[CHB][hapmap]
rs1952245	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1952246	0.83[EUR][1000 genomes]
rs1958111	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1958112	0.82[CEU][hapmap]
rs1958113	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1958115	0.83[EUR][1000 genomes]
rs1958116	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs1980850	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes]
rs2038565	1.00[JPT][hapmap]
rs2038979	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2243905	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2254173	0.91[AMR][1000 genomes]
rs2255767	1.00[CHB][hapmap]
rs2588806	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2588807	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2588808	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2588809	1.00[CHB][hapmap]
rs2588813	0.83[CEU][hapmap]
rs2588814	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2588815	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2588816	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2588818	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2588819	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2588820	0.86[AMR][1000 genomes]
rs2588821	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs2588823	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs2588824	0.86[AMR][1000 genomes]
rs2588825	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs2588826	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2588827	0.84[EUR][1000 genomes]
rs2588828	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2588829	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2588830	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs2588831	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs2588832	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs2588833	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2588834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2767365	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2767366	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs2767367	0.87[EUR][1000 genomes]
rs2767368	0.88[EUR][1000 genomes]
rs2767377	1.00[CHB][hapmap]
rs2767378	1.00[CHB][hapmap]
rs2767379	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2767382	0.82[EUR][1000 genomes]
rs2767383	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2767384	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34409637	1.00[CHB][hapmap]
rs34558039	0.83[EUR][1000 genomes]
rs365934	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs372143	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs373918	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs378408	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs401021	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs411547	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs419450	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs424032	0.92[EUR][1000 genomes]
rs431649	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs435620	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs437585	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs440627	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs445921	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs448445	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6573817	0.82[CEU][hapmap]
rs7141160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145044	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs7150705	1.00[JPT][hapmap]
rs7150903	1.00[JPT][hapmap]
rs7151235	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs7155764	1.00[CHB][hapmap]
rs7156822	0.88[EUR][1000 genomes]
rs725453	1.00[CHB][hapmap]
rs72725183	0.85[EUR][1000 genomes]
rs72725185	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72725186	0.89[EUR][1000 genomes]
rs72725187	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72725188	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8014524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015128	1.00[JPT][hapmap]
rs8021404	1.00[JPT][hapmap]
rs8022206	1.00[JPT][hapmap]
rs959039	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68547200-68567400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68556400-68568400	Weak transcription	Primary T cells from cord blood	blood
3	chr14:68556600-68565400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:68556600-68568000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:68557000-68565600	Weak transcription	Fetal Lung	lung
6	chr14:68561400-68563400	Enhancers	Colon Smooth Muscle	Colon
7	chr14:68561600-68568200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:68561800-68565000	Weak transcription	Fetal Kidney	kidney
9	chr14:68562200-68568400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:68562800-68563600	Enhancers	Rectal Smooth Muscle	rectum
11	chr14:68563000-68563600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:68563200-68563400	Enhancers	Ovary	ovary
13	chr14:68563200-68565600	Weak transcription	Fetal Muscle Leg	muscle

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