Variant report

Variant	rs1315984
Chromosome Location	chr14:68697788-68697789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68688076..68702777-chr14:69257523..69263819,21	MCF-7	breast:
2	chr14:68610235..68612397-chr14:68697672..68699451,2	MCF-7	breast:
3	chr14:68602094..68605658-chr14:68697621..68700210,3	MCF-7	breast:
4	chr14:68630532..68635204-chr14:68697159..68701180,5	MCF-7	breast:
5	chr14:68697764..68699372-chr14:68745653..68748495,2	MCF-7	breast:
6	chr14:68697623..68699184-chr14:68705803..68708348,2	MCF-7	breast:
7	chr14:68675359..68680545-chr14:68694673..68700591,7	MCF-7	breast:
8	chr14:68697755..68699525-chr14:68925028..68926847,2	MCF-7	breast:
9	chr14:68676724..68679537-chr14:68695696..68698941,3	MCF-7	breast:
10	chr14:68696801..68698863-chr17:57914178..57916102,2	MCF-7	breast:
11	chr14:68406980..68410129-chr14:68693689..68698967,5	MCF-7	breast:
12	chr14:68690736..68692847-chr14:68696080..68698135,2	K562	blood:
13	chr14:68400663..68402399-chr14:68697653..68700271,2	MCF-7	breast:
14	chr14:68611791..68614328-chr14:68697550..68699528,2	MCF-7	breast:
15	chr14:68658527..68664263-chr14:68695508..68700857,17	MCF-7	breast:
16	chr14:68657222..68663496-chr14:68695468..68701015,13	MCF-7	breast:
17	chr14:68696499..68699543-chr14:68714462..68717236,3	MCF-7	breast:
18	chr14:68691744..68694555-chr14:68697000..68699651,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000062716	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1022978	0.86[ASN][1000 genomes]
rs1028842	0.88[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1080321	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628885	0.84[EUR][1000 genomes]
rs1274637	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274638	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274639	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274640	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274641	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274642	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274643	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274644	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274645	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274646	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274647	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274648	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274649	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274650	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274651	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274652	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274653	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274654	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274655	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274656	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274657	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274658	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274659	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274661	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12894297	0.86[ASN][1000 genomes]
rs1290939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1295780	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1295781	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1295782	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1296527	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1298340	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1299581	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1314911	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs1314912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314914	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314916	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs1314918	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314919	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314921	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1316014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316118	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316170	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467673	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1536455	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1555945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17105269	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1744947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1744949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1744959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1751381	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1751382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1951631	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1952245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1958111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1958113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1958116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1980850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2038979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2243905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2254173	0.86[ASN][1000 genomes]
rs2255767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2478777	0.80[ASN][1000 genomes]
rs2588806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588809	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2588814	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588818	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588820	0.86[ASN][1000 genomes]
rs2588821	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2588823	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588824	0.86[ASN][1000 genomes]
rs2588825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588826	0.86[ASN][1000 genomes]
rs2588828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588829	0.86[ASN][1000 genomes]
rs2588834	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2767365	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2767377	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767378	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2767383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2767384	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs34409637	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs435620	1.00[CHB][hapmap]
rs7141160	1.00[CHB][hapmap]
rs7141450	1.00[CHB][hapmap]
rs7155764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs725453	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs959039	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68676800-68703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68678800-68697800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68681600-68698200	Weak transcription	Psoas Muscle	Psoas
4	chr14:68685000-68705200	Weak transcription	K562	blood
5	chr14:68690800-68712800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:68691000-68705800	Weak transcription	Primary T cells from cord blood	blood
7	chr14:68693000-68705800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:68695800-68701000	Enhancers	Liver	Liver
9	chr14:68696000-68700400	Enhancers	NHDF-Ad	bronchial
10	chr14:68696000-68701400	Enhancers	Fetal Stomach	stomach
11	chr14:68696200-68700400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr14:68696400-68697800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr14:68696400-68697800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr14:68696400-68698200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:68696400-68698600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:68696400-68700400	Enhancers	Fetal Muscle Leg	muscle
17	chr14:68696400-68700800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr14:68696400-68701000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:68696400-68701200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr14:68696600-68698000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr14:68696600-68698200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr14:68696600-68698800	Enhancers	GM12878-XiMat	blood
23	chr14:68696600-68702000	Enhancers	Stomach Mucosa	stomach
24	chr14:68696800-68697800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr14:68696800-68698400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr14:68696800-68698600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:68696800-68699800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr14:68696800-68699800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr14:68697000-68697800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr14:68697000-68698000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr14:68697000-68699600	Enhancers	H9 Cell Line	embryonic stem cell
32	chr14:68697000-68700000	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr14:68697000-68701200	Enhancers	Fetal Intestine Small	intestine
34	chr14:68697000-68701400	Enhancers	Colon Smooth Muscle	Colon
35	chr14:68697000-68702000	Enhancers	Fetal Kidney	kidney
36	chr14:68697000-68702000	Enhancers	Fetal Lung	lung
37	chr14:68697000-68702000	Enhancers	NH-A	brain
38	chr14:68697200-68698000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr14:68697200-68698800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr14:68697200-68698800	Enhancers	Rectal Smooth Muscle	rectum
41	chr14:68697200-68699000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr14:68697200-68699000	Enhancers	Osteobl	bone
43	chr14:68697200-68699400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:68697200-68700000	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr14:68697200-68700400	Enhancers	NHLF	lung
46	chr14:68697200-68700800	Enhancers	Stomach Smooth Muscle	stomach
47	chr14:68697200-68701200	Enhancers	Hela-S3	cervix
48	chr14:68697200-68701400	Enhancers	HMEC	breast
49	chr14:68697400-68697800	Enhancers	Small Intestine	intestine
50	chr14:68697400-68698200	Weak transcription	Pancreas	Pancrea

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