Variant report

Variant	rs435620
Chromosome Location	chr14:68587803-68587804
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs1022978	0.81[EUR][1000 genomes]
rs1080958	0.84[CEU][hapmap]
rs11158718	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs11624484	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs11629073	0.81[EUR][1000 genomes]
rs12436203	0.83[EUR][1000 genomes]
rs12437043	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1274637	1.00[CHB][hapmap]
rs1274638	1.00[CHB][hapmap]
rs1274639	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1274640	1.00[CHB][hapmap]
rs1274643	1.00[CHB][hapmap]
rs1274645	1.00[CHB][hapmap]
rs1274646	1.00[CHB][hapmap]
rs1274650	1.00[CHB][hapmap]
rs1274651	1.00[CHB][hapmap]
rs1274652	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1274655	1.00[CHB][hapmap]
rs1274656	1.00[CHB][hapmap]
rs1274657	1.00[CHB][hapmap]
rs1274658	1.00[CHB][hapmap]
rs1274659	1.00[CHB][hapmap]
rs1290939	1.00[CHB][hapmap]
rs1295780	1.00[CHB][hapmap]
rs1295782	1.00[CHB][hapmap]
rs1296527	1.00[CHB][hapmap]
rs1298340	1.00[CHB][hapmap]
rs1314912	1.00[CHB][hapmap]
rs1314913	1.00[CHB][hapmap]
rs1314914	1.00[CHB][hapmap]
rs1314915	1.00[CHB][hapmap]
rs1314918	1.00[CHB][hapmap]
rs1315984	1.00[CHB][hapmap]
rs1316014	1.00[CHB][hapmap]
rs1316118	1.00[CHB][hapmap]
rs1316170	1.00[CHB][hapmap]
rs1467673	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1548264	0.80[AMR][1000 genomes]
rs1555944	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs1555945	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs17104908	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1744947	1.00[CHB][hapmap]
rs1744949	1.00[CHB][hapmap]
rs1744959	1.00[CHB][hapmap]
rs1751381	1.00[CHB][hapmap]
rs1751382	1.00[CHB][hapmap]
rs1951410	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1951631	1.00[CHB][hapmap]
rs1952245	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs1952246	0.80[EUR][1000 genomes]
rs1958111	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs1958112	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs1958113	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs1958115	0.80[EUR][1000 genomes]
rs1958116	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1980850	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2038979	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs2243905	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2255767	1.00[CHB][hapmap]
rs2588806	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2588807	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2588808	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs2588809	1.00[CHB][hapmap]
rs2588813	0.83[CEU][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2588814	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs2588815	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs2588816	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs2588818	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs2588819	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs2588821	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2588823	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2588825	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2588827	0.82[EUR][1000 genomes]
rs2588828	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2588830	0.94[CEU][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2588831	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2588832	0.94[CEU][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2588833	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2588834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs2588835	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2767365	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs2767366	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2767367	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2767368	0.86[EUR][1000 genomes]
rs2767377	1.00[CHB][hapmap]
rs2767378	1.00[CHB][hapmap]
rs2767379	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2767383	0.83[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs2767384	0.83[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs34409637	1.00[CHB][hapmap]
rs34558039	0.81[EUR][1000 genomes]
rs365934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372143	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs373918	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs378408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs401021	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs408156	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs411547	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs419450	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs424032	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs431649	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs437585	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs440627	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs445921	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs448445	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6573817	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs67566613	0.80[AMR][1000 genomes]
rs7141160	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes]
rs7141450	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7145044	0.81[CEU][hapmap]
rs7151235	0.80[CEU][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7155764	1.00[CHB][hapmap]
rs7156822	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs725453	1.00[CHB][hapmap]
rs72725183	0.83[EUR][1000 genomes]
rs72725185	0.85[EUR][1000 genomes]
rs72725186	0.86[EUR][1000 genomes]
rs72725187	0.85[EUR][1000 genomes]
rs72725188	0.85[EUR][1000 genomes]
rs8011527	0.81[AMR][1000 genomes]
rs8014524	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs959039	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68573800-68591800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68576400-68592000	Weak transcription	Psoas Muscle	Psoas
3	chr14:68578600-68592800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr14:68578800-68590800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:68580600-68598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:68583600-68593800	Weak transcription	Stomach Mucosa	stomach
7	chr14:68585600-68588000	Weak transcription	Fetal Brain Male	brain
8	chr14:68585800-68591800	Weak transcription	Fetal Heart	heart

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