Variant report

Variant	rs408156
Chromosome Location	chr14:68581256-68581257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68577333..68579172-chr14:68579200..68581367,2	MCF-7	breast:
2	chr14:68573827..68576752-chr14:68577004..68581266,3	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10129355	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs10129612	0.82[JPT][hapmap]
rs10132022	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs10133262	0.80[CHB][hapmap]
rs10136129	0.80[CHB][hapmap]
rs10136790	0.80[CHB][hapmap]
rs10139236	0.84[JPT][hapmap]
rs10139386	0.84[JPT][hapmap]
rs10143455	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs10143843	0.80[CHB][hapmap]
rs1080958	0.84[JPT][hapmap]
rs11158719	0.83[JPT][hapmap]
rs11622787	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs11623355	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs11623467	0.83[JPT][hapmap]
rs11844529	0.80[CHB][hapmap]
rs11846344	0.80[CHB][hapmap]
rs11850191	0.80[CHB][hapmap]
rs11852180	0.80[CHB][hapmap]
rs12431697	0.80[CHB][hapmap]
rs12437043	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12437178	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs13329056	0.80[CHB][hapmap]
rs1548264	0.84[JPT][hapmap]
rs1548265	0.83[JPT][hapmap]
rs17104776	0.80[CHB][hapmap]
rs17104800	0.80[CHB][hapmap]
rs17104889	0.83[JPT][hapmap]
rs17104908	0.83[ASW][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1980654	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs1980655	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs2208596	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs2588813	0.87[YRI][hapmap]
rs2588830	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2588831	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2588832	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2588833	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2588835	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2767366	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2767367	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2877369	0.80[CHB][hapmap]
rs365934	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs372143	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs373918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs378408	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs401021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs411547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs424032	0.83[AMR][1000 genomes]
rs431649	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs435620	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs437585	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4902535	0.80[CHB][hapmap]
rs4902536	0.80[CHB][hapmap]
rs4902538	0.80[CHB][hapmap]
rs4902540	0.80[CHB][hapmap]
rs6573805	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs7142112	0.80[CHB][hapmap]
rs7142210	0.80[CHB][hapmap]
rs7146354	0.80[CHB][hapmap]
rs7150168	0.83[JPT][hapmap]
rs7151235	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7154646	0.80[CHB][hapmap]
rs7155097	0.80[CHB][hapmap]
rs7155840	0.80[CHB][hapmap]
rs7156822	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7157185	0.80[CHB][hapmap]
rs7158544	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs8014000	0.83[JPT][hapmap]
rs8016525	0.80[CHB][hapmap]
rs8020795	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs9323501	0.80[CHB][hapmap]
rs9672142	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68573800-68591800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68576400-68592000	Weak transcription	Psoas Muscle	Psoas
3	chr14:68578400-68583400	Weak transcription	HepG2	liver
4	chr14:68578600-68592800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr14:68578800-68584200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:68578800-68590800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:68579000-68584200	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:68579600-68585000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:68580600-68598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:68580800-68583200	Weak transcription	Fetal Intestine Large	intestine
11	chr14:68580800-68585400	Weak transcription	Fetal Lung	lung
12	chr14:68581000-68586800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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