Variant report

Variant	rs12437043
Chromosome Location	chr14:68562792-68562793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68561716..68564326-chr14:68711214..68713015,2	MCF-7	breast:

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10129355	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs10129612	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs10132022	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs10133262	0.86[CHB][hapmap]
rs10133883	0.80[ASN][1000 genomes]
rs10136129	0.86[CHB][hapmap]
rs10136790	0.86[CHB][hapmap]
rs10136868	0.80[ASN][1000 genomes]
rs10137233	0.87[ASN][1000 genomes]
rs10139236	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10139386	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10140420	0.87[ASN][1000 genomes]
rs10140493	0.87[ASN][1000 genomes]
rs10143455	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs10143843	0.86[CHB][hapmap]
rs10148527	0.86[CHB][hapmap]
rs10151115	0.87[ASN][1000 genomes]
rs1080956	0.87[ASN][1000 genomes]
rs1080957	0.87[ASN][1000 genomes]
rs1080958	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs11158715	0.86[CHB][hapmap]
rs11158717	0.80[ASN][1000 genomes]
rs11158719	0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs11622787	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs11623355	0.86[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs11623467	0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs11623984	0.80[ASN][1000 genomes]
rs11624209	0.87[ASN][1000 genomes]
rs11628745	0.87[ASN][1000 genomes]
rs11844529	0.86[CHB][hapmap]
rs11846344	0.86[CHB][hapmap]
rs11846526	0.85[YRI][hapmap]
rs11847339	0.83[ASN][1000 genomes]
rs11850191	0.86[CHB][hapmap]
rs11851597	0.83[ASN][1000 genomes]
rs11852180	0.86[CHB][hapmap]
rs12100584	0.86[CHB][hapmap]
rs12431697	0.86[CHB][hapmap]
rs12432681	0.80[ASN][1000 genomes]
rs12437178	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs12880237	0.89[YRI][hapmap]
rs13329056	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1548264	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1548265	0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs1555944	0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17104764	0.86[CHB][hapmap]
rs17104776	0.86[CHB][hapmap]
rs17104800	0.86[CHB][hapmap]
rs17104889	0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs17104908	1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17105269	0.85[YRI][hapmap]
rs1810639	0.87[ASN][1000 genomes]
rs1951410	0.90[EUR][1000 genomes]
rs1958112	0.84[AMR][1000 genomes]
rs1980654	0.86[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs1980655	0.86[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs2208596	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs2588813	0.86[AMR][1000 genomes]
rs2588826	0.80[EUR][1000 genomes]
rs2588828	0.80[EUR][1000 genomes]
rs2588829	0.80[EUR][1000 genomes]
rs2588830	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2588831	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2588832	1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2588833	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2588834	0.87[EUR][1000 genomes]
rs2588835	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2767365	0.84[EUR][1000 genomes]
rs2767366	0.86[CHB][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2767367	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2877369	0.86[CHB][hapmap]
rs33949561	0.87[ASN][1000 genomes]
rs365934	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs372143	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs373918	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs378408	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs401021	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs408156	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs411547	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs419450	0.90[EUR][1000 genomes]
rs424032	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs431649	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs435620	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs437585	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs440627	0.90[EUR][1000 genomes]
rs4436722	0.86[CHB][hapmap]
rs445921	0.90[EUR][1000 genomes]
rs448445	0.90[EUR][1000 genomes]
rs4899231	0.87[ASN][1000 genomes]
rs4899232	0.87[ASN][1000 genomes]
rs4902535	0.86[CHB][hapmap]
rs4902536	0.86[CHB][hapmap]
rs4902538	0.86[CHB][hapmap]
rs4902540	0.86[CHB][hapmap]
rs4902545	0.82[ASN][1000 genomes]
rs4902547	0.87[ASN][1000 genomes]
rs4902548	0.83[ASN][1000 genomes]
rs60471554	0.80[ASN][1000 genomes]
rs60562079	0.83[ASN][1000 genomes]
rs6573805	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs6573814	0.80[ASN][1000 genomes]
rs6573817	0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67566613	0.87[ASN][1000 genomes]
rs68139749	0.87[ASN][1000 genomes]
rs7141160	0.90[EUR][1000 genomes]
rs7141450	0.90[EUR][1000 genomes]
rs7142112	0.86[CHB][hapmap]
rs7142210	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs7145089	0.83[ASN][1000 genomes]
rs7146354	0.86[CHB][hapmap]
rs7149343	0.83[ASN][1000 genomes]
rs7150168	0.86[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs7151235	0.84[CHB][hapmap];0.84[AMR][1000 genomes]
rs7153978	0.83[ASN][1000 genomes]
rs7154228	0.83[ASN][1000 genomes]
rs7154645	0.83[ASN][1000 genomes]
rs7154646	0.86[CHB][hapmap]
rs7155097	0.86[CHB][hapmap]
rs7155152	0.83[ASN][1000 genomes]
rs7155840	0.86[CHB][hapmap]
rs7156822	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157185	0.86[CHB][hapmap]
rs7158544	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs7161069	0.80[ASN][1000 genomes]
rs72725190	0.87[ASN][1000 genomes]
rs8006492	0.80[ASN][1000 genomes]
rs8008413	0.83[ASN][1000 genomes]
rs8011527	0.91[AMR][1000 genomes]
rs8011621	0.87[ASN][1000 genomes]
rs8014000	0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs8014524	0.90[EUR][1000 genomes]
rs8016525	0.86[CHB][hapmap]
rs8020795	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs9323501	0.86[CHB][hapmap]
rs9323502	0.87[ASN][1000 genomes]
rs9672142	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68547200-68567400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68556400-68568400	Weak transcription	Primary T cells from cord blood	blood
3	chr14:68556600-68565400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:68556600-68568000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:68557000-68562800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:68557000-68565600	Weak transcription	Fetal Lung	lung
7	chr14:68561400-68563400	Enhancers	Colon Smooth Muscle	Colon
8	chr14:68561600-68563000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:68561600-68568200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:68561800-68562800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:68561800-68565000	Weak transcription	Fetal Kidney	kidney
12	chr14:68562200-68568400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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