Variant report

Variant	rs12880237
Chromosome Location	chr14:68621818-68621819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11846526	0.85[YRI][hapmap]
rs12437043	0.89[YRI][hapmap]
rs1555944	0.85[ASW][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes]
rs17105269	0.85[YRI][hapmap]
rs1958114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6573817	0.85[ASW][hapmap];0.82[MKK][hapmap];0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1048794	chr14:68614152-68649231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68607200-68623600	Weak transcription	Ovary	ovary
2	chr14:68612600-68628000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:68613000-68631200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr14:68614200-68622400	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:68614400-68624600	Weak transcription	Osteobl	bone
6	chr14:68615600-68624200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:68620600-68622400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:68620800-68627000	Weak transcription	Psoas Muscle	Psoas
9	chr14:68621200-68622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:68621200-68630000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr14:68621400-68622400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr14:68621400-68622800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:68621400-68628200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr14:68621400-68631000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:68621800-68622800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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