Variant report

Variant	rs17105269
Chromosome Location	chr14:68725826-68725827
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68722518..68726023-chr14:68727697..68732553,5	K562	blood:
2	chr14:68718502..68724365-chr14:68724697..68730654,11	MCF-7	breast:
3	chr14:68725759..68728590-chr14:68771718..68773261,2	MCF-7	breast:
4	chr14:68725759..68727922-chr14:68735191..68737141,2	MCF-7	breast:
5	chr14:68710991..68712652-chr14:68725529..68728244,2	MCF-7	breast:
6	chr14:68708487..68726231-chr14:69250578..69263645,103	MCF-7	breast:
7	chr14:68406185..68411686-chr14:68720403..68727836,10	MCF-7	breast:
8	chr14:68723841..68726668-chr14:68738353..68741257,2	MCF-7	breast:
9	chr14:68605465..68608854-chr14:68724307..68725901,3	MCF-7	breast:
10	chr14:68604670..68608287-chr14:68720771..68726254,6	MCF-7	breast:
11	chr14:68725397..68727137-chr14:68733335..68735181,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1028842	1.00[JPT][hapmap]
rs1080321	0.86[EUR][1000 genomes]
rs11628885	0.91[CEU][hapmap];0.98[EUR][1000 genomes]
rs11846526	0.82[YRI][hapmap]
rs12437043	0.85[YRI][hapmap]
rs1274637	0.87[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1274638	0.86[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1274639	1.00[JPT][hapmap]
rs1274640	0.93[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1274642	0.80[EUR][1000 genomes]
rs1274643	0.93[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs1274644	0.80[EUR][1000 genomes]
rs1274645	0.80[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1274646	0.86[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1274647	0.80[EUR][1000 genomes]
rs1274648	0.90[EUR][1000 genomes]
rs1274649	0.80[EUR][1000 genomes]
rs1274650	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1274651	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1274652	0.92[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs1274653	0.90[EUR][1000 genomes]
rs1274654	0.80[EUR][1000 genomes]
rs1274655	0.93[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs1274656	0.93[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs1274657	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1274658	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1274659	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1274661	0.80[EUR][1000 genomes]
rs12880237	0.85[YRI][hapmap]
rs1290939	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs1295780	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1295781	0.80[EUR][1000 genomes]
rs1295782	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1296527	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs1298340	0.93[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs1299581	0.80[EUR][1000 genomes]
rs1314911	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs1314912	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1314913	0.86[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs1314914	0.93[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs1314915	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1314916	0.93[CEU][hapmap];0.97[EUR][1000 genomes]
rs1314918	0.88[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs1314919	0.86[EUR][1000 genomes]
rs1314921	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1315984	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1316014	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1316118	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs1316170	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs1467673	1.00[JPT][hapmap]
rs1536455	0.80[EUR][1000 genomes]
rs1555944	0.91[YRI][hapmap]
rs1555945	1.00[JPT][hapmap]
rs1744947	0.87[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1744949	0.87[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1744959	0.88[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1751381	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs1751382	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1951631	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1952245	1.00[JPT][hapmap]
rs1958111	1.00[JPT][hapmap]
rs1958113	1.00[JPT][hapmap]
rs1958116	1.00[JPT][hapmap]
rs1980850	1.00[JPT][hapmap]
rs2038979	1.00[JPT][hapmap]
rs2243905	1.00[JPT][hapmap]
rs2255767	0.87[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs2588806	1.00[JPT][hapmap]
rs2588807	1.00[JPT][hapmap]
rs2588808	1.00[JPT][hapmap]
rs2588809	1.00[JPT][hapmap]
rs2588814	1.00[JPT][hapmap]
rs2588815	1.00[JPT][hapmap]
rs2588816	1.00[JPT][hapmap]
rs2588818	1.00[JPT][hapmap]
rs2588819	1.00[JPT][hapmap]
rs2588821	1.00[JPT][hapmap]
rs2588823	1.00[JPT][hapmap]
rs2588825	1.00[JPT][hapmap]
rs2588828	1.00[JPT][hapmap]
rs2588834	1.00[JPT][hapmap]
rs2767365	1.00[JPT][hapmap]
rs2767377	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2767378	0.87[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs2767379	1.00[JPT][hapmap]
rs2767383	1.00[JPT][hapmap]
rs2767384	1.00[JPT][hapmap]
rs34409637	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6573817	0.91[YRI][hapmap]
rs7155764	0.87[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs725453	0.93[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68715200-68727200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr14:68718600-68727000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr14:68718600-68727600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr14:68718600-68727800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr14:68718800-68730600	Weak transcription	Fetal Intestine Large	intestine
6	chr14:68718800-68730600	Weak transcription	Small Intestine	intestine
7	chr14:68719000-68727400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:68721400-68726400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:68721400-68727000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr14:68722200-68727000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:68722200-68727200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:68722400-68739800	Weak transcription	Gastric	stomach
13	chr14:68722800-68727200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr14:68722800-68727600	Weak transcription	Primary B cells from cord blood	blood
15	chr14:68723000-68726400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:68723000-68726600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:68723000-68727800	Weak transcription	Colon Smooth Muscle	Colon
18	chr14:68723200-68728400	Weak transcription	Ovary	ovary
19	chr14:68723400-68726400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:68723400-68726800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:68723400-68730400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:68723400-68736000	Weak transcription	Aorta	Aorta
23	chr14:68723600-68726800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:68723600-68726800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr14:68723600-68727600	Weak transcription	HUVEC	blood vessel
26	chr14:68723600-68730400	Weak transcription	Fetal Kidney	kidney
27	chr14:68723800-68727200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr14:68724000-68726600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr14:68724000-68727400	Weak transcription	Fetal Lung	lung
30	chr14:68724800-68727800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr14:68724800-68730000	Enhancers	Primary T cells fromperipheralblood	blood
32	chr14:68725000-68727600	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr14:68725000-68727800	Enhancers	Primary T cells from cord blood	blood
34	chr14:68725000-68728000	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr14:68725000-68729200	Enhancers	H9 Cell Line	embryonic stem cell
36	chr14:68725000-68731200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr14:68725200-68726400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:68725200-68727200	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr14:68725200-68727400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr14:68725400-68726000	Enhancers	Thymus	Thymus
41	chr14:68725400-68727600	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr14:68725400-68727600	Enhancers	GM12878-XiMat	blood
43	chr14:68725400-68730200	Enhancers	Fetal Thymus	thymus
44	chr14:68725400-68731000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr14:68725400-68731000	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr14:68725400-68731200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr14:68725400-68731200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr14:68725400-68731400	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr14:68725400-68731600	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr14:68725400-68731800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links