Variant report

Variant	rs11628885
Chromosome Location	chr14:68724790-68724791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68722518..68726023-chr14:68727697..68732553,5	K562	blood:
2	chr14:68718502..68724365-chr14:68724697..68730654,11	MCF-7	breast:
3	chr14:68721992..68725773-chr14:68931800..68936275,3	MCF-7	breast:
4	chr14:68708487..68726231-chr14:69250578..69263645,103	MCF-7	breast:
5	chr14:68718999..68725813-chr14:68770906..68776082,15	MCF-7	breast:
6	chr14:68722990..68725291-chr14:68734778..68737297,2	MCF-7	breast:
7	chr14:68711091..68724838-chr14:69248065..69264571,70	MCF-7	breast:
8	chr14:68406185..68411686-chr14:68720403..68727836,10	MCF-7	breast:
9	chr14:68721191..68725230-chr14:68727220..68729721,4	MCF-7	breast:
10	chr14:68723841..68726668-chr14:68738353..68741257,2	MCF-7	breast:
11	chr14:68605465..68608854-chr14:68724307..68725901,3	MCF-7	breast:
12	chr14:68604670..68608287-chr14:68720771..68726254,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1028842	0.81[EUR][1000 genomes]
rs1080321	0.87[EUR][1000 genomes]
rs1274637	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs1274638	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs1274639	0.81[EUR][1000 genomes]
rs1274640	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1274641	0.81[EUR][1000 genomes]
rs1274642	0.82[EUR][1000 genomes]
rs1274643	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1274644	0.82[EUR][1000 genomes]
rs1274645	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs1274646	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs1274647	0.82[EUR][1000 genomes]
rs1274648	0.92[EUR][1000 genomes]
rs1274649	0.82[EUR][1000 genomes]
rs1274650	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1274651	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1274652	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1274653	0.92[EUR][1000 genomes]
rs1274654	0.82[EUR][1000 genomes]
rs1274655	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1274656	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1274657	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1274658	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1274659	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1274661	0.82[EUR][1000 genomes]
rs1295780	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1295781	0.82[EUR][1000 genomes]
rs1295782	0.82[EUR][1000 genomes]
rs1296527	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs1298340	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1299581	0.82[EUR][1000 genomes]
rs1314911	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1314912	0.84[EUR][1000 genomes]
rs1314913	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs1314914	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1314915	0.84[EUR][1000 genomes]
rs1314916	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1314918	0.87[EUR][1000 genomes]
rs1314919	0.87[EUR][1000 genomes]
rs1314921	0.98[EUR][1000 genomes]
rs1315984	0.84[EUR][1000 genomes]
rs1316014	0.84[EUR][1000 genomes]
rs1316118	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs1316170	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs1536455	0.82[EUR][1000 genomes]
rs17105269	0.91[CEU][hapmap];0.98[EUR][1000 genomes]
rs1744947	0.82[EUR][1000 genomes]
rs1744949	0.82[EUR][1000 genomes]
rs1744959	0.87[EUR][1000 genomes]
rs1751381	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs1751382	0.84[EUR][1000 genomes]
rs1951631	0.91[CEU][hapmap];0.99[EUR][1000 genomes]
rs1951633	1.00[ASN][1000 genomes]
rs1952246	1.00[AFR][1000 genomes]
rs1958115	1.00[AFR][1000 genomes]
rs2255767	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs2588808	0.84[CEU][hapmap]
rs2588809	0.82[CEU][hapmap]
rs2588827	1.00[AFR][1000 genomes]
rs2767377	0.84[CEU][hapmap]
rs2767378	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs2767382	1.00[AFR][1000 genomes]
rs34409637	0.91[CEU][hapmap];1.00[EUR][1000 genomes]
rs7155764	0.89[EUR][1000 genomes]
rs725453	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68715200-68727200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr14:68717800-68725600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:68718600-68727000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:68718600-68727600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:68718600-68727800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr14:68718800-68725400	Weak transcription	Fetal Thymus	thymus
7	chr14:68718800-68730600	Weak transcription	Fetal Intestine Large	intestine
8	chr14:68718800-68730600	Weak transcription	Small Intestine	intestine
9	chr14:68719000-68727400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:68721400-68726400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:68721400-68727000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr14:68721600-68725400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:68722200-68727000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:68722200-68727200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:68722400-68739800	Weak transcription	Gastric	stomach
16	chr14:68722800-68725400	Weak transcription	GM12878-XiMat	blood
17	chr14:68722800-68727200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr14:68722800-68727600	Weak transcription	Primary B cells from cord blood	blood
19	chr14:68723000-68725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr14:68723000-68726400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr14:68723000-68726600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr14:68723000-68727800	Weak transcription	Colon Smooth Muscle	Colon
23	chr14:68723200-68725000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr14:68723200-68725000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:68723200-68725000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr14:68723200-68725400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr14:68723200-68725600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr14:68723200-68728400	Weak transcription	Ovary	ovary
29	chr14:68723400-68724800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr14:68723400-68725000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr14:68723400-68725000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr14:68723400-68725200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr14:68723400-68725200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:68723400-68725400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr14:68723400-68725400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr14:68723400-68725400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr14:68723400-68725400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr14:68723400-68725400	Weak transcription	Thymus	Thymus
39	chr14:68723400-68725600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr14:68723400-68725600	Weak transcription	Fetal Stomach	stomach
41	chr14:68723400-68726400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:68723400-68726800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr14:68723400-68730400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr14:68723400-68736000	Weak transcription	Aorta	Aorta
45	chr14:68723600-68724800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr14:68723600-68725400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr14:68723600-68725400	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr14:68723600-68726800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:68723600-68726800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr14:68723600-68727600	Weak transcription	HUVEC	blood vessel

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