Variant report

Variant	rs1316170
Chromosome Location	chr14:68698472-68698473
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68688076..68702777-chr14:69257523..69263819,21	MCF-7	breast:
2	chr14:68610235..68612397-chr14:68697672..68699451,2	MCF-7	breast:
3	chr14:68697979..68700527-chr14:69251377..69254277,2	MCF-7	breast:
4	chr14:68602094..68605658-chr14:68697621..68700210,3	MCF-7	breast:
5	chr14:68630532..68635204-chr14:68697159..68701180,5	MCF-7	breast:
6	chr14:68697764..68699372-chr14:68745653..68748495,2	MCF-7	breast:
7	chr14:68697623..68699184-chr14:68705803..68708348,2	MCF-7	breast:
8	chr14:68675359..68680545-chr14:68694673..68700591,7	MCF-7	breast:
9	chr14:68697755..68699525-chr14:68925028..68926847,2	MCF-7	breast:
10	chr14:68405745..68408366-chr14:68697948..68699941,3	MCF-7	breast:
11	chr14:68676724..68679537-chr14:68695696..68698941,3	MCF-7	breast:
12	chr14:68696801..68698863-chr17:57914178..57916102,2	MCF-7	breast:
13	chr14:68406980..68410129-chr14:68693689..68698967,5	MCF-7	breast:
14	chr14:68400663..68402399-chr14:68697653..68700271,2	MCF-7	breast:
15	chr14:68611791..68614328-chr14:68697550..68699528,2	MCF-7	breast:
16	chr14:68658527..68664263-chr14:68695508..68700857,17	MCF-7	breast:
17	chr14:68605985..68611095-chr14:68698031..68701146,7	MCF-7	breast:
18	chr14:68657222..68663496-chr14:68695468..68701015,13	MCF-7	breast:
19	chr14:68698187..68701712-chr14:69259612..69262470,4	MCF-7	breast:
20	chr14:68696499..68699543-chr14:68714462..68717236,3	MCF-7	breast:
21	chr14:68691744..68694555-chr14:68697000..68699651,2	MCF-7	breast:
22	chr14:68628675..68631095-chr14:68697947..68699547,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000062716	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1022978	0.86[ASN][1000 genomes]
rs1028842	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1080321	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628885	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs1274637	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274638	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274640	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274641	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274642	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274643	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274644	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274645	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274646	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274647	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274648	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274649	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274650	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274651	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274652	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274653	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274654	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274655	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274656	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274657	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274658	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274659	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274661	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12894297	0.86[ASN][1000 genomes]
rs1290939	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1295780	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1295781	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1295782	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1296527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1298340	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1299581	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1314911	0.93[CEU][hapmap];0.99[EUR][1000 genomes]
rs1314912	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314913	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314914	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314915	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314916	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs1314918	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314919	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314921	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1315984	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316014	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467673	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1536455	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1555945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17105269	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs1744947	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1744949	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1744959	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1751381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1751382	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1951631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1952245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1958111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1958113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1958116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1980850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2038979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2243905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2254173	0.86[ASN][1000 genomes]
rs2255767	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2478777	0.80[ASN][1000 genomes]
rs2588806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2588809	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2588814	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588818	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588820	0.86[ASN][1000 genomes]
rs2588821	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2588823	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588824	0.86[ASN][1000 genomes]
rs2588825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588826	0.86[ASN][1000 genomes]
rs2588828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2588829	0.86[ASN][1000 genomes]
rs2588834	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2767365	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2767377	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767378	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2767379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2767383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2767384	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs34409637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs435620	1.00[CHB][hapmap]
rs7141160	1.00[CHB][hapmap]
rs7141450	1.00[CHB][hapmap]
rs7155764	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs725453	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs959039	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68676800-68703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68685000-68705200	Weak transcription	K562	blood
3	chr14:68690800-68712800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:68691000-68705800	Weak transcription	Primary T cells from cord blood	blood
5	chr14:68693000-68705800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:68695800-68701000	Enhancers	Liver	Liver
7	chr14:68696000-68700400	Enhancers	NHDF-Ad	bronchial
8	chr14:68696000-68701400	Enhancers	Fetal Stomach	stomach
9	chr14:68696200-68700400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr14:68696400-68698600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:68696400-68700400	Enhancers	Fetal Muscle Leg	muscle
12	chr14:68696400-68700800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr14:68696400-68701000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:68696400-68701200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr14:68696600-68698800	Enhancers	GM12878-XiMat	blood
16	chr14:68696600-68702000	Enhancers	Stomach Mucosa	stomach
17	chr14:68696800-68698600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:68696800-68699800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr14:68696800-68699800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr14:68697000-68699600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr14:68697000-68700000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr14:68697000-68701200	Enhancers	Fetal Intestine Small	intestine
23	chr14:68697000-68701400	Enhancers	Colon Smooth Muscle	Colon
24	chr14:68697000-68702000	Enhancers	Fetal Kidney	kidney
25	chr14:68697000-68702000	Enhancers	Fetal Lung	lung
26	chr14:68697000-68702000	Enhancers	NH-A	brain
27	chr14:68697200-68698800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:68697200-68698800	Enhancers	Rectal Smooth Muscle	rectum
29	chr14:68697200-68699000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr14:68697200-68699000	Enhancers	Osteobl	bone
31	chr14:68697200-68699400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:68697200-68700000	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr14:68697200-68700400	Enhancers	NHLF	lung
34	chr14:68697200-68700800	Enhancers	Stomach Smooth Muscle	stomach
35	chr14:68697200-68701200	Enhancers	Hela-S3	cervix
36	chr14:68697200-68701400	Enhancers	HMEC	breast
37	chr14:68697400-68699400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr14:68697400-68699400	Flanking Active TSS	A549	lung
39	chr14:68697400-68702000	Enhancers	Fetal Intestine Large	intestine
40	chr14:68697400-68711400	Weak transcription	Spleen	Spleen
41	chr14:68697400-68712400	Weak transcription	Aorta	Aorta
42	chr14:68697600-68699000	Enhancers	NHEK	skin
43	chr14:68697600-68699800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:68697600-68699800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr14:68697600-68700800	Enhancers	HSMMtube	muscle
46	chr14:68697600-68701400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:68697600-68701600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr14:68697600-68714400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr14:68697800-68699000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr14:68697800-68699800	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links