Variant report

Variant	rs1314921
Chromosome Location	chr14:68715181-68715182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:30)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:30 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68710270..68718985-chr14:68771545..68777065,19	MCF-7	breast:
2	chr14:68715136..68717167-chr14:68924205..68927016,2	MCF-7	breast:
3	chr14:68655074..68665772-chr14:68705598..68717948,30	MCF-7	breast:
4	chr14:68656043..68661099-chr14:68710391..68716081,7	MCF-7	breast:
5	chr14:68715036..68715912-chr14:68829845..68830845,3	MCF-7	breast:
6	chr14:68714804..68718493-chr14:68766094..68768941,3	MCF-7	breast:
7	chr14:68712652..68716237-chr14:68722010..68723872,3	MCF-7	breast:
8	chr14:68713706..68716273-chr14:69277811..69279687,2	MCF-7	breast:
9	chr14:68713244..68715360-chr14:69094064..69096283,2	MCF-7	breast:
10	chr14:68714111..68716167-chr14:68924259..68925879,2	MCF-7	breast:
11	chr14:68711627..68715466-chr14:69257359..69259390,3	K562	blood:
12	chr14:68712832..68721681-chr14:69280637..69286048,12	MCF-7	breast:
13	chr14:68407127..68413734-chr14:68709753..68718255,16	MCF-7	breast:
14	chr14:68714818..68717761-chr14:68719497..68721496,2	MCF-7	breast:
15	chr14:68714912..68718303-chr14:68931649..68935294,4	MCF-7	breast:
16	chr14:68604504..68610375-chr14:68709920..68717829,10	MCF-7	breast:
17	chr14:68713914..68715966-chr14:69283266..69284939,2	MCF-7	breast:
18	chr14:68708487..68726231-chr14:69250578..69263645,103	MCF-7	breast:
19	chr14:68409323..68412497-chr14:68713379..68716018,3	MCF-7	breast:
20	chr14:68711091..68724838-chr14:69248065..69264571,70	MCF-7	breast:
21	chr14:68713812..68718253-chr14:68930214..68933178,5	MCF-7	breast:
22	chr14:68714423..68716152-chr14:69252930..69254680,2	K562	blood:
23	chr14:68714815..68715343-chr14:69283526..69284102,2	MCF-7	breast:
24	chr14:68549897..68552411-chr14:68713293..68716629,3	MCF-7	breast:
25	chr14:68631809..68634739-chr14:68711873..68715827,4	MCF-7	breast:
26	chr14:68673468..68675267-chr14:68712695..68715486,2	MCF-7	breast:
27	chr14:68714723..68716100-chr14:69255351..69256589,7	MCF-7	breast:
28	chr14:68696499..68699543-chr14:68714462..68717236,3	MCF-7	breast:
29	chr14:68647380..68649631-chr14:68713647..68715279,2	MCF-7	breast:
30	chr14:68713328..68715932-chr14:68978216..68981551,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1028842	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1080321	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11628885	0.98[EUR][1000 genomes]
rs1274637	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1274638	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1274639	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1274640	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1274641	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1274642	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1274643	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1274644	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1274645	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1274646	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1274647	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1274648	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1274649	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1274650	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1274651	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1274652	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1274653	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1274654	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1274655	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1274656	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1274657	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1274658	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1274659	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1274661	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1290939	0.89[AMR][1000 genomes]
rs1295780	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1295781	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1295782	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1296527	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1298340	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1299581	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1314911	0.95[EUR][1000 genomes]
rs1314912	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1314913	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1314914	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1314915	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1314916	0.99[EUR][1000 genomes]
rs1314918	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1314919	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1315984	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1316014	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1316118	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1316170	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1536455	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17105269	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1744947	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1744949	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1744959	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1751381	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1751382	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1951631	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2255767	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2588808	0.85[AMR][1000 genomes]
rs2588809	0.81[AMR][1000 genomes]
rs2767377	0.81[EUR][1000 genomes]
rs2767378	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34409637	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7155764	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs725453	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68703000-68718800	Enhancers	Fetal Intestine Large	intestine
2	chr14:68703200-68718800	Enhancers	Fetal Intestine Small	intestine
3	chr14:68707200-68724000	Enhancers	Fetal Lung	lung
4	chr14:68707400-68715800	Enhancers	Duodenum Mucosa	Duodenum
5	chr14:68707600-68720400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:68707800-68717800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr14:68707800-68718000	Enhancers	Stomach Mucosa	stomach
8	chr14:68708200-68715400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr14:68708400-68715400	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr14:68709000-68715400	Weak transcription	Esophagus	oesophagus
11	chr14:68709600-68717800	Enhancers	Adipose Nuclei	Adipose
12	chr14:68710000-68718800	Enhancers	Rectal Smooth Muscle	rectum
13	chr14:68710200-68718600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr14:68710200-68718800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr14:68710200-68719000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:68710200-68719400	Enhancers	Fetal Heart	heart
17	chr14:68710400-68718600	Enhancers	Brain Hippocampus Middle	brain
18	chr14:68710400-68718600	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr14:68710400-68718800	Enhancers	Fetal Stomach	stomach
20	chr14:68710800-68717800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:68710800-68718600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:68710800-68719000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:68711200-68718600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:68711400-68715200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr14:68711400-68715400	Enhancers	Primary hematopoietic stem cells	blood
26	chr14:68711400-68715600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:68711400-68719200	Enhancers	Colon Smooth Muscle	Colon
28	chr14:68711600-68715600	Weak transcription	Gastric	stomach
29	chr14:68712000-68717800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:68712200-68717800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:68712200-68718000	Enhancers	Brain Anterior Caudate	brain
32	chr14:68712200-68718000	Enhancers	HUVEC	blood vessel
33	chr14:68712200-68718000	Enhancers	Osteobl	bone
34	chr14:68712200-68723600	Enhancers	Fetal Kidney	kidney
35	chr14:68712400-68717600	Enhancers	Liver	Liver
36	chr14:68712400-68718400	Enhancers	HepG2	liver
37	chr14:68712400-68718800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr14:68712400-68719400	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr14:68712600-68715400	Enhancers	Stomach Smooth Muscle	stomach
40	chr14:68712600-68717800	Enhancers	HSMM	muscle
41	chr14:68712800-68715400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr14:68712800-68715400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr14:68712800-68715600	Weak transcription	Lung	lung
44	chr14:68712800-68718000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:68712800-68718400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:68712800-68718400	Enhancers	Hela-S3	cervix
47	chr14:68712800-68723600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr14:68713000-68715400	Weak transcription	Fetal Brain Male	brain
49	chr14:68713000-68715600	Enhancers	HSMMtube	muscle
50	chr14:68713000-68718200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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