Variant report

Variant	rs1314916
Chromosome Location	chr14:68710834-68710835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68710270..68718985-chr14:68771545..68777065,19	MCF-7	breast:
2	chr14:68639908..68642790-chr14:68708877..68711719,2	MCF-7	breast:
3	chr14:68655074..68665772-chr14:68705598..68717948,30	MCF-7	breast:
4	chr14:68656043..68661099-chr14:68710391..68716081,7	MCF-7	breast:
5	chr14:68710192..68712093-chr14:69280950..69283017,2	MCF-7	breast:
6	chr14:68407127..68413734-chr14:68709753..68718255,16	MCF-7	breast:
7	chr14:68661354..68663465-chr14:68710043..68713099,3	MCF-7	breast:
8	chr14:68604504..68610375-chr14:68709920..68717829,10	MCF-7	breast:
9	chr14:68708487..68726231-chr14:69250578..69263645,103	MCF-7	breast:
10	chr14:68710399..68712782-chr14:68867549..68870456,2	MCF-7	breast:
11	chr14:68709546..68712212-chr14:68720910..68723399,2	MCF-7	breast:
12	chr14:68708247..68712239-chr14:68715393..68718268,4	MCF-7	breast:
13	chr14:68709605..68712034-chr14:68773176..68774923,2	MCF-7	breast:
14	chr14:68431037..68432737-chr14:68710733..68713003,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1028842	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs10483809	1.00[CHB][hapmap]
rs1080321	0.88[EUR][1000 genomes]
rs11621638	1.00[ASN][1000 genomes]
rs11628885	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1274637	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs1274638	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs1274639	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs1274640	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1274641	0.82[EUR][1000 genomes]
rs1274642	0.83[EUR][1000 genomes]
rs1274643	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1274644	0.83[EUR][1000 genomes]
rs1274645	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1274646	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs1274647	0.83[EUR][1000 genomes]
rs1274648	0.93[EUR][1000 genomes]
rs1274649	0.83[EUR][1000 genomes]
rs1274650	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs1274651	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs1274652	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1274653	0.93[EUR][1000 genomes]
rs1274654	0.83[EUR][1000 genomes]
rs1274655	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1274656	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1274657	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs1274658	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs1274659	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs1274661	0.83[EUR][1000 genomes]
rs1290939	0.81[CEU][hapmap]
rs1295780	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs1295781	0.83[EUR][1000 genomes]
rs1295782	0.83[EUR][1000 genomes]
rs1296527	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs1298340	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1299581	0.83[EUR][1000 genomes]
rs1314911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1314912	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs1314913	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs1314914	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1314915	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1314918	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs1314919	0.88[EUR][1000 genomes]
rs1314921	0.99[EUR][1000 genomes]
rs1315984	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs1316014	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs1316118	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs1316170	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs1536455	0.83[EUR][1000 genomes]
rs17105269	0.93[CEU][hapmap];0.97[EUR][1000 genomes]
rs1744947	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs1744949	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs1744959	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs1751381	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs1751382	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs17828548	1.00[CHB][hapmap]
rs1951631	0.93[CEU][hapmap];0.98[EUR][1000 genomes]
rs1952246	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1958115	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2038979	0.82[CEU][hapmap]
rs2255767	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs2588808	0.82[CEU][hapmap]
rs2588809	0.81[CEU][hapmap]
rs2588814	0.81[CEU][hapmap]
rs2588819	0.81[CEU][hapmap]
rs2588827	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2767368	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2767377	0.88[CEU][hapmap]
rs2767378	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs2767382	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34409637	0.93[CEU][hapmap];0.99[EUR][1000 genomes]
rs34558039	1.00[ASN][1000 genomes]
rs7155764	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs725453	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs72725154	1.00[ASN][1000 genomes]
rs72725158	1.00[ASN][1000 genomes]
rs72725160	1.00[ASN][1000 genomes]
rs72725163	1.00[ASN][1000 genomes]
rs72725173	1.00[ASN][1000 genomes]
rs729138	1.00[CHB][hapmap]
rs8009813	1.00[CHB][hapmap]
rs8010233	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68690800-68712800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:68697400-68711400	Weak transcription	Spleen	Spleen
3	chr14:68697400-68712400	Weak transcription	Aorta	Aorta
4	chr14:68697600-68714400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:68703000-68714000	Enhancers	Fetal Muscle Leg	muscle
6	chr14:68703000-68718800	Enhancers	Fetal Intestine Large	intestine
7	chr14:68703200-68711000	Enhancers	Colon Smooth Muscle	Colon
8	chr14:68703200-68718800	Enhancers	Fetal Intestine Small	intestine
9	chr14:68704400-68714400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:68706800-68712400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:68707000-68712400	Weak transcription	Placenta	Placenta
12	chr14:68707000-68713400	Weak transcription	GM12878-XiMat	blood
13	chr14:68707200-68724000	Enhancers	Fetal Lung	lung
14	chr14:68707400-68711400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr14:68707400-68715800	Enhancers	Duodenum Mucosa	Duodenum
16	chr14:68707600-68712400	Weak transcription	HepG2	liver
17	chr14:68707600-68720400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:68707800-68712400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:68707800-68712400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr14:68707800-68717800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr14:68707800-68718000	Enhancers	Stomach Mucosa	stomach
22	chr14:68708000-68711200	Weak transcription	Colonic Mucosa	Colon
23	chr14:68708000-68711200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:68708000-68711400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr14:68708200-68715400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr14:68708400-68715400	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr14:68709000-68711200	Weak transcription	Psoas Muscle	Psoas
28	chr14:68709000-68712000	Weak transcription	Ovary	ovary
29	chr14:68709000-68712000	Weak transcription	Thymus	Thymus
30	chr14:68709000-68715400	Weak transcription	Esophagus	oesophagus
31	chr14:68709200-68711200	Weak transcription	Left Ventricle	heart
32	chr14:68709200-68711800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr14:68709200-68712400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr14:68709200-68712400	Weak transcription	Lung	lung
35	chr14:68709600-68711000	Weak transcription	Fetal Thymus	thymus
36	chr14:68709600-68711600	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr14:68709600-68717800	Enhancers	Adipose Nuclei	Adipose
38	chr14:68709800-68711000	Weak transcription	Right Atrium	heart
39	chr14:68709800-68712400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr14:68709800-68712400	Weak transcription	Pancreas	Pancrea
41	chr14:68710000-68718800	Enhancers	Rectal Smooth Muscle	rectum
42	chr14:68710200-68711000	Enhancers	Liver	Liver
43	chr14:68710200-68711200	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr14:68710200-68711200	Genic enhancers	A549	lung
45	chr14:68710200-68711400	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr14:68710200-68711400	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr14:68710200-68711400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr14:68710200-68711600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:68710200-68711800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr14:68710200-68711800	Enhancers	Brain Angular Gyrus	brain

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