Variant report

Variant	rs8009813
Chromosome Location	chr14:68826519-68826520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68819003..68821969-chr14:68824921..68827031,3	MCF-7	breast:
2	chr14:68820537..68822571-chr14:68826087..68829022,2	MCF-7	breast:
3	chr14:68716909..68718440-chr14:68825908..68828082,2	MCF-7	breast:
4	chr14:68715317..68717585-chr14:68825893..68828768,2	MCF-7	breast:
5	chr14:68825944..68827460-chr14:68863306..68865139,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10134240	1.00[CHB][hapmap]
rs10483809	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1274639	1.00[CHB][hapmap]
rs1314911	1.00[CHB][hapmap]
rs1314916	1.00[CHB][hapmap]
rs17105494	0.81[CEU][hapmap]
rs17828548	1.00[CHB][hapmap];0.83[TSI][hapmap]
rs1952246	1.00[CHB][hapmap]
rs1958115	1.00[CHB][hapmap]
rs35896204	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56086327	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56758822	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56838746	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729138	1.00[CHB][hapmap]
rs74059304	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74059308	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74059309	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010233	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:68816600-68826600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:68824400-68827200	Enhancers	Fetal Kidney	kidney
4	chr14:68824400-68828600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr14:68824400-68829400	Enhancers	Primary T cells from cord blood	blood
6	chr14:68824600-68828000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:68824800-68827200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr14:68824800-68827400	Enhancers	Fetal Lung	lung
9	chr14:68825000-68827200	Enhancers	Fetal Stomach	stomach
10	chr14:68825000-68827200	Enhancers	Spleen	Spleen
11	chr14:68825000-68827400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr14:68825000-68827800	Enhancers	Brain Anterior Caudate	brain
13	chr14:68825200-68827600	Enhancers	Colon Smooth Muscle	Colon
14	chr14:68825400-68827200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:68825400-68827800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr14:68825600-68826600	Enhancers	Primary hematopoietic stem cells	blood
17	chr14:68825600-68826800	Enhancers	Colonic Mucosa	Colon
18	chr14:68825600-68827000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:68825600-68827200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:68825600-68827200	Enhancers	Primary T cells fromperipheralblood	blood
21	chr14:68825600-68827200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr14:68825600-68827200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:68825600-68827200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr14:68825600-68827200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr14:68825600-68827400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr14:68825600-68827400	Enhancers	Stomach Smooth Muscle	stomach
27	chr14:68825600-68827600	Enhancers	Aorta	Aorta
28	chr14:68825600-68827800	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr14:68825600-68827800	Enhancers	Brain Hippocampus Middle	brain
30	chr14:68825600-68828000	Enhancers	Primary B cells from cord blood	blood
31	chr14:68825600-68828000	Enhancers	Fetal Intestine Large	intestine
32	chr14:68825600-68828000	Enhancers	Fetal Muscle Leg	muscle
33	chr14:68825600-68828000	Enhancers	Fetal Thymus	thymus
34	chr14:68825600-68828200	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr14:68825600-68828400	Enhancers	Brain Substantia Nigra	brain
36	chr14:68825600-68832000	Enhancers	Primary B cells from peripheral blood	blood
37	chr14:68825800-68826600	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr14:68825800-68826600	Weak transcription	Brain Angular Gyrus	brain
39	chr14:68825800-68826600	Enhancers	Lung	lung
40	chr14:68825800-68826800	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr14:68825800-68826800	Enhancers	A549	lung
42	chr14:68825800-68827000	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr14:68825800-68827000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr14:68825800-68827200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr14:68825800-68827400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:68825800-68827400	Enhancers	Brain Cingulate Gyrus	brain
47	chr14:68825800-68827600	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr14:68825800-68827600	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr14:68825800-68827600	Enhancers	Right Atrium	heart
50	chr14:68825800-68827600	Enhancers	HSMMtube	muscle

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