Variant report

Variant	rs56086327
Chromosome Location	chr14:68845910-68845911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68830853..68833594-chr14:68845594..68847240,2	MCF-7	breast:
2	chr14:68839948..68842055-chr14:68844186..68845983,2	MCF-7	breast:
3	chr14:68845018..68847710-chr14:69258981..69260905,2	MCF-7	breast:
4	chr14:68843051..68845983-chr14:68924155..68927430,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10483809	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35896204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56758822	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56838746	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74059304	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74059308	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74059309	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009813	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68832000-68851600	Weak transcription	Lung	lung
2	chr14:68834400-68846400	Weak transcription	Fetal Heart	heart
3	chr14:68836400-68847000	Weak transcription	Aorta	Aorta
4	chr14:68839800-68850600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:68840600-68847600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr14:68840600-68847800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:68840800-68847400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr14:68840800-68847400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr14:68840800-68847600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr14:68840800-68847600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr14:68841000-68846000	Enhancers	Fetal Lung	lung
12	chr14:68841400-68847200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr14:68842400-68846400	Enhancers	Colon Smooth Muscle	Colon
14	chr14:68842400-68850400	Weak transcription	Pancreas	Pancrea
15	chr14:68843200-68846600	Enhancers	Primary T cells from cord blood	blood
16	chr14:68843400-68850000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr14:68843600-68850600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr14:68843800-68847400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr14:68844000-68850000	Weak transcription	Right Ventricle	heart
20	chr14:68844200-68848800	Weak transcription	Psoas Muscle	Psoas
21	chr14:68844400-68846000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:68844400-68846400	Weak transcription	HSMM	muscle
23	chr14:68844400-68850000	Weak transcription	Right Atrium	heart
24	chr14:68844600-68846000	Enhancers	Primary B cells from cord blood	blood
25	chr14:68844600-68846000	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr14:68844600-68846000	Weak transcription	Fetal Muscle Leg	muscle
27	chr14:68844600-68846000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr14:68844600-68846200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:68844600-68846200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr14:68844600-68846200	Weak transcription	NH-A	brain
31	chr14:68844600-68846200	Weak transcription	NHDF-Ad	bronchial
32	chr14:68844600-68846400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:68844600-68846400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:68844600-68846400	Weak transcription	Placenta	Placenta
35	chr14:68844600-68846600	Weak transcription	HMEC	breast
36	chr14:68844600-68846800	Weak transcription	HSMMtube	muscle
37	chr14:68844600-68847000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:68844600-68847200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:68844600-68847200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:68844600-68847200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr14:68844600-68847200	Weak transcription	NHEK	skin
42	chr14:68844600-68847800	Enhancers	Adipose Nuclei	Adipose
43	chr14:68844600-68850000	Weak transcription	Fetal Thymus	thymus
44	chr14:68844600-68850000	Weak transcription	Left Ventricle	heart
45	chr14:68844600-68850000	Weak transcription	Ovary	ovary
46	chr14:68844600-68850000	Weak transcription	Small Intestine	intestine
47	chr14:68844600-68850600	Weak transcription	A549	lung
48	chr14:68844600-68851000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr14:68844600-68851000	Weak transcription	NHLF	lung
50	chr14:68844600-68851200	Weak transcription	Spleen	Spleen

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