Variant report

Variant	rs35896204
Chromosome Location	chr14:68833213-68833214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68831265..68833449-chr14:68839230..68840971,2	K562	blood:
2	chr14:68655604..68658456-chr14:68831451..68833713,2	MCF-7	breast:
3	chr14:68827902..68830472-chr14:68830504..68833278,2	MCF-7	breast:
4	chr14:68830853..68833594-chr14:68845594..68847240,2	MCF-7	breast:
5	chr14:68832613..68834269-chr14:69259859..69261484,2	MCF-7	breast:
6	chr14:68833173..68835923-chr14:68849243..68851394,2	MCF-7	breast:
7	chr14:68829901..68834300-chr14:68923345..68927378,4	MCF-7	breast:
8	chr14:68831946..68833547-chr14:69257471..69259179,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10483809	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56086327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56758822	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56838746	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74059304	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74059308	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74059309	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009813	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68826200-68835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr14:68827200-68833400	Weak transcription	Esophagus	oesophagus
3	chr14:68827200-68834200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:68827200-68834400	Weak transcription	Small Intestine	intestine
5	chr14:68827200-68834800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:68827400-68835000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:68828200-68835000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr14:68829600-68835400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:68829600-68837400	Enhancers	Primary hematopoietic stem cells	blood
10	chr14:68829600-68837400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:68829800-68833600	Enhancers	Primary T cells from cord blood	blood
12	chr14:68829800-68837400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr14:68830000-68835200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr14:68830200-68833800	Enhancers	A549	lung
15	chr14:68830200-68834400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr14:68830200-68836200	Enhancers	Fetal Lung	lung
17	chr14:68830600-68836800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr14:68830800-68833600	Enhancers	Colon Smooth Muscle	Colon
19	chr14:68830800-68835200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr14:68831000-68835800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:68831200-68833800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:68831200-68833800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr14:68831200-68834600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:68831400-68835000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:68831600-68836600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr14:68831800-68833800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr14:68831800-68834200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr14:68831800-68838400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr14:68831800-68841600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr14:68831800-68844200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr14:68832000-68833400	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr14:68832000-68833400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr14:68832000-68833400	Weak transcription	Right Atrium	heart
34	chr14:68832000-68834200	Weak transcription	Fetal Thymus	thymus
35	chr14:68832000-68834200	Weak transcription	HSMM	muscle
36	chr14:68832000-68834400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:68832000-68834400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr14:68832000-68835200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr14:68832000-68835600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr14:68832000-68836200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr14:68832000-68836600	Weak transcription	HSMMtube	muscle
42	chr14:68832000-68843200	Weak transcription	Placenta	Placenta
43	chr14:68832000-68843800	Weak transcription	Ovary	ovary
44	chr14:68832000-68844200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr14:68832000-68851600	Weak transcription	Lung	lung
46	chr14:68832200-68833400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr14:68832200-68833400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr14:68832200-68833400	Weak transcription	Fetal Stomach	stomach
49	chr14:68832200-68833400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr14:68832200-68833600	Weak transcription	Brain Anterior Caudate	brain

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