Variant report

Variant	rs2767382
Chromosome Location	chr14:68644046-68644047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68641953..68644221-chr14:69257289..69259823,2	MCF-7	breast:
2	chr14:68642384..68644094-chr14:69260119..69262796,2	MCF-7	breast:
3	chr14:68634548..68636217-chr14:68642165..68644435,2	MCF-7	breast:
4	chr14:68641461..68644387-chr14:69250543..69254390,3	MCF-7	breast:
5	chr14:68635724..68652229-chr14:68652309..68662207,28	MCF-7	breast:
6	chr14:68642683..68644188-chr14:68647557..68649281,2	MCF-7	breast:
7	chr14:68606603..68609632-chr14:68643322..68645400,3	MCF-7	breast:
8	chr14:68642568..68644686-chr14:68655694..68658682,2	MCF-7	breast:
9	chr14:68604998..68610062-chr14:68640494..68644617,7	MCF-7	breast:
10	chr14:68641980..68649731-chr14:69257226..69262968,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1022978	0.96[EUR][1000 genomes]
rs11621638	1.00[ASN][1000 genomes]
rs11628885	1.00[AFR][1000 genomes]
rs12894297	0.92[EUR][1000 genomes]
rs1314911	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1314916	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1467673	0.91[EUR][1000 genomes]
rs1555944	0.86[EUR][1000 genomes]
rs1555945	0.96[EUR][1000 genomes]
rs1951410	0.82[EUR][1000 genomes]
rs1952245	0.97[EUR][1000 genomes]
rs1952246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958111	0.97[EUR][1000 genomes]
rs1958112	0.90[EUR][1000 genomes]
rs1958113	0.97[EUR][1000 genomes]
rs1958115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958116	0.92[EUR][1000 genomes]
rs1980850	0.92[EUR][1000 genomes]
rs2038979	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2243905	0.96[EUR][1000 genomes]
rs2254173	0.91[EUR][1000 genomes]
rs2478777	0.88[EUR][1000 genomes]
rs2588806	0.96[EUR][1000 genomes]
rs2588807	0.96[EUR][1000 genomes]
rs2588808	0.95[EUR][1000 genomes]
rs2588813	0.90[EUR][1000 genomes]
rs2588814	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2588815	0.97[EUR][1000 genomes]
rs2588816	0.97[EUR][1000 genomes]
rs2588818	0.97[EUR][1000 genomes]
rs2588819	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2588820	0.92[EUR][1000 genomes]
rs2588821	0.92[EUR][1000 genomes]
rs2588823	0.89[EUR][1000 genomes]
rs2588824	0.91[EUR][1000 genomes]
rs2588825	0.91[EUR][1000 genomes]
rs2588826	0.90[EUR][1000 genomes]
rs2588827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2588828	0.90[EUR][1000 genomes]
rs2588829	0.90[EUR][1000 genomes]
rs2588830	0.87[EUR][1000 genomes]
rs2588833	0.83[EUR][1000 genomes]
rs2588834	0.85[EUR][1000 genomes]
rs2767365	0.88[EUR][1000 genomes]
rs2767368	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2767379	0.96[EUR][1000 genomes]
rs2767383	0.95[EUR][1000 genomes]
rs2767384	0.95[EUR][1000 genomes]
rs34558039	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs419450	0.82[EUR][1000 genomes]
rs437585	0.83[EUR][1000 genomes]
rs440627	0.82[EUR][1000 genomes]
rs445921	0.82[EUR][1000 genomes]
rs448445	0.82[EUR][1000 genomes]
rs6573817	0.90[EUR][1000 genomes]
rs7141160	0.82[EUR][1000 genomes]
rs7141450	0.82[EUR][1000 genomes]
rs72725154	1.00[ASN][1000 genomes]
rs72725158	1.00[ASN][1000 genomes]
rs72725160	1.00[ASN][1000 genomes]
rs72725163	1.00[ASN][1000 genomes]
rs72725173	1.00[ASN][1000 genomes]
rs8011527	0.90[EUR][1000 genomes]
rs8014524	0.82[EUR][1000 genomes]
rs959039	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1048794	chr14:68614152-68649231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68635400-68648200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:68636200-68644400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:68636200-68648000	Weak transcription	HSMM	muscle
4	chr14:68638600-68645600	Enhancers	Rectal Smooth Muscle	rectum
5	chr14:68638800-68645800	Enhancers	Colon Smooth Muscle	Colon
6	chr14:68640400-68644200	Weak transcription	Fetal Stomach	stomach
7	chr14:68640400-68645400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:68640400-68647600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:68640400-68648000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:68640600-68648200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:68641000-68644200	Weak transcription	Small Intestine	intestine
12	chr14:68641000-68644600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:68641000-68644600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr14:68641000-68644600	Weak transcription	Osteobl	bone
15	chr14:68641000-68648200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr14:68641000-68648200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr14:68641200-68644400	Weak transcription	Ovary	ovary
18	chr14:68641200-68644400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr14:68641200-68644600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:68641200-68647600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:68641400-68647400	Weak transcription	HepG2	liver
22	chr14:68641400-68648400	Weak transcription	Liver	Liver
23	chr14:68641400-68658000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr14:68641600-68645000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:68642200-68644600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr14:68642200-68644600	Weak transcription	Fetal Kidney	kidney
27	chr14:68642200-68647400	Weak transcription	Fetal Intestine Large	intestine
28	chr14:68642400-68644200	Weak transcription	Fetal Intestine Small	intestine
29	chr14:68642400-68644600	Weak transcription	Stomach Mucosa	stomach
30	chr14:68642400-68659800	Weak transcription	Pancreas	Pancrea
31	chr14:68643000-68645600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:68643400-68646000	Enhancers	A549	lung
33	chr14:68643600-68645200	Enhancers	Stomach Smooth Muscle	stomach
34	chr14:68643600-68646000	Enhancers	Fetal Heart	heart
35	chr14:68643800-68645600	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr14:68643800-68645800	Enhancers	Fetal Lung	lung
37	chr14:68644000-68644800	Enhancers	Esophagus	oesophagus
38	chr14:68644000-68644800	Enhancers	Psoas Muscle	Psoas

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