Variant report

Variant	rs10148527
Chromosome Location	chr14:68368055-68368056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68351803..68353790-chr14:68365929..68368559,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 166 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs10129355	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs10129612	1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs10130829	0.92[ASN][1000 genomes]
rs10132022	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10132711	0.88[JPT][hapmap]
rs10132828	0.86[JPT][hapmap]
rs10133262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10133652	0.82[JPT][hapmap]
rs10135316	0.83[JPT][hapmap]
rs10135925	0.82[JPT][hapmap]
rs10136129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10136174	0.95[ASN][1000 genomes]
rs10136790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10137712	0.82[JPT][hapmap]
rs10139236	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs10139386	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs10139548	0.87[ASN][1000 genomes]
rs10140097	0.88[ASN][1000 genomes]
rs10140282	0.95[ASN][1000 genomes]
rs10143219	0.83[JPT][hapmap]
rs10143455	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs10143843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10143895	0.83[JPT][hapmap]
rs10144128	0.82[JPT][hapmap]
rs10144995	0.95[ASN][1000 genomes]
rs10145884	0.83[JPT][hapmap]
rs10146719	0.83[JPT][hapmap]
rs10146766	0.82[JPT][hapmap]
rs10146831	0.89[JPT][hapmap]
rs10147569	0.82[JPT][hapmap]
rs10148893	0.82[JPT][hapmap]
rs1015023	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10151123	0.83[JPT][hapmap]
rs10151317	0.83[JPT][hapmap]
rs10151387	0.93[ASN][1000 genomes]
rs10450891	0.82[JPT][hapmap]
rs10467735	0.97[ASN][1000 genomes]
rs10483805	0.80[CHB][hapmap]
rs1080958	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs10873210	0.90[ASN][1000 genomes]
rs11158700	0.88[EUR][1000 genomes]
rs11158701	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs11158710	0.82[JPT][hapmap]
rs11158715	1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs11158719	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs1118397	0.82[JPT][hapmap]
rs11622243	0.95[ASN][1000 genomes]
rs11622787	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs11623355	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11623467	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs11624166	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs11626280	0.98[ASN][1000 genomes]
rs11626332	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs11626594	0.96[CEU][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11844529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11846344	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11850191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11852180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12100584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12431490	0.88[EUR][1000 genomes]
rs12431697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12432558	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs12434751	0.88[EUR][1000 genomes]
rs12437043	0.86[CHB][hapmap]
rs12437178	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs13329056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1548264	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs1548265	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs17104764	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17104774	0.83[JPT][hapmap]
rs17104776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17104783	0.89[JPT][hapmap]
rs17104786	0.82[JPT][hapmap]
rs17104793	0.82[JPT][hapmap]
rs17104796	0.82[JPT][hapmap]
rs17104799	0.82[JPT][hapmap]
rs17104800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17104823	0.82[JPT][hapmap]
rs17104824	0.83[JPT][hapmap]
rs17104827	0.83[JPT][hapmap]
rs17104829	0.83[JPT][hapmap]
rs17104889	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs17104908	0.91[JPT][hapmap]
rs17783202	0.82[JPT][hapmap]
rs181572	0.80[CHB][hapmap]
rs1950766	0.82[JPT][hapmap]
rs1950767	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950769	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1956346	0.80[CHB][hapmap]
rs1980654	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1980655	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2009191	0.98[ASN][1000 genomes]
rs2093358	0.88[ASN][1000 genomes]
rs2180537	0.82[JPT][hapmap]
rs2208596	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs2235965	0.80[CHB][hapmap]
rs2295108	0.80[CHB][hapmap]
rs28444723	0.98[ASN][1000 genomes]
rs28474995	0.92[ASN][1000 genomes]
rs28488544	0.98[ASN][1000 genomes]
rs28509330	0.93[ASN][1000 genomes]
rs28713367	0.87[EUR][1000 genomes]
rs2877369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs28855496	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4436722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4902533	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4902536	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4902538	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4902539	0.98[ASN][1000 genomes]
rs4902540	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4902544	0.88[ASN][1000 genomes]
rs57990032	0.85[ASN][1000 genomes]
rs58151429	0.98[ASN][1000 genomes]
rs60201005	0.95[ASN][1000 genomes]
rs60415085	0.93[ASN][1000 genomes]
rs6573800	0.95[ASN][1000 genomes]
rs6573801	0.98[ASN][1000 genomes]
rs6573802	0.81[JPT][hapmap]
rs6573805	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7142112	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7142210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7142860	0.98[ASN][1000 genomes]
rs7145771	0.98[ASN][1000 genomes]
rs7146354	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7147296	0.82[JPT][hapmap]
rs7149460	0.83[JPT][hapmap]
rs7150168	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7150705	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs7150903	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs7151091	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7151495	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs7154646	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7154725	0.83[JPT][hapmap]
rs7155097	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7155840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7157185	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7157288	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs7157550	0.83[JPT][hapmap]
rs7157720	0.83[JPT][hapmap]
rs7158544	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7160115	0.98[ASN][1000 genomes]
rs7160196	0.80[CHB][hapmap]
rs72725127	0.88[EUR][1000 genomes]
rs764088	0.83[EUR][1000 genomes]
rs8006175	0.83[JPT][hapmap]
rs8006437	0.97[ASN][1000 genomes]
rs8008791	0.82[JPT][hapmap]
rs8009358	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8009455	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8013677	0.98[ASN][1000 genomes]
rs8014000	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs8015741	0.82[JPT][hapmap]
rs8016525	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs8017007	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8020512	0.82[JPT][hapmap]
rs8020795	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs9323501	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs961700	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9652362	0.83[JPT][hapmap]
rs9652363	0.83[JPT][hapmap]
rs9652364	0.83[JPT][hapmap]
rs9672142	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs9796374	0.82[JPT][hapmap]
rs986382	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68364200-68374000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:68364400-68368400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr14:68365800-68374800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:68367000-68368200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:68367400-68368200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
6	chr14:68367600-68368400	ZNF genes & repeats	Primary B cells from cord blood	blood
7	chr14:68367600-68368400	ZNF genes & repeats	Primary T cells from cord blood	blood
8	chr14:68367800-68368200	ZNF genes & repeats	Ovary	ovary
9	chr14:68367800-68368400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:68367800-68368400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr14:68367800-68368600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:68367800-68368600	ZNF genes & repeats	Dnd41	blood
13	chr14:68367800-68368800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr14:68368000-68370600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links