Variant report

Variant	rs8013677
Chromosome Location	chr14:68399196-68399197
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68327408..68329079-chr14:68398161..68400444,2	MCF-7	breast:
2	chr14:68398959..68401535-chr14:69255427..69257747,2	MCF-7	breast:
3	chr14:68398984..68402674-chr14:69258242..69262759,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs10129355	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10129612	0.94[CEU][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10130829	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10132022	0.94[CEU][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10133262	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133883	0.92[EUR][1000 genomes]
rs10136129	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136174	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136790	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136868	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10139236	0.84[CEU][hapmap]
rs10139386	0.84[CEU][hapmap];0.88[YRI][hapmap]
rs10139548	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10140097	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10140282	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10143455	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10143843	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10144995	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10148527	0.98[ASN][1000 genomes]
rs10151115	0.84[EUR][1000 genomes]
rs10151387	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10467735	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1080956	0.84[EUR][1000 genomes]
rs1080957	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs1080958	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs10873210	0.83[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158715	0.94[CEU][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158716	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs11158717	0.86[EUR][1000 genomes]
rs11158719	0.83[CEU][hapmap]
rs11622135	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs11622243	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11622787	1.00[CEU][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11623355	1.00[CEU][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11623984	0.92[EUR][1000 genomes]
rs11624166	0.80[YRI][hapmap]
rs11624609	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs11626280	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844529	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11846344	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11848187	0.88[EUR][1000 genomes]
rs11848769	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs11850191	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11850946	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs11852180	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11852208	0.87[EUR][1000 genomes]
rs12100584	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12431697	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432681	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12435554	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12437178	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437276	0.88[EUR][1000 genomes]
rs13329056	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1548264	0.84[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs1548265	0.84[CEU][hapmap];0.89[YRI][hapmap]
rs17104764	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104776	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17104800	0.94[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104889	0.83[CEU][hapmap];0.83[YRI][hapmap]
rs17192558	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs17192586	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs17783304	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs1950767	0.98[ASN][1000 genomes]
rs1980654	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1980655	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2009191	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038565	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs2093358	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2208596	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28444723	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28470365	0.84[EUR][1000 genomes]
rs28474827	0.85[EUR][1000 genomes]
rs28474995	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28488544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28509330	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28649231	0.83[AMR][1000 genomes]
rs2877369	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28855496	0.98[ASN][1000 genomes]
rs34588410	0.88[EUR][1000 genomes]
rs34723132	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4436722	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899231	0.84[EUR][1000 genomes]
rs4899232	0.83[EUR][1000 genomes]
rs4902533	0.98[ASN][1000 genomes]
rs4902535	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902536	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902538	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902539	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902540	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902544	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902545	0.84[EUR][1000 genomes]
rs57990032	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58151429	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60201005	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60415085	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60471554	0.92[EUR][1000 genomes]
rs6573800	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573801	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573805	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573814	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67566613	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7142112	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142210	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142860	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145044	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7145771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146354	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150168	0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs7151091	0.80[YRI][hapmap]
rs7151917	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7154014	0.84[EUR][1000 genomes]
rs7154646	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7155097	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7155840	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7155985	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7157185	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158544	1.00[CEU][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7160115	0.84[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161069	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72725138	0.81[EUR][1000 genomes]
rs72725141	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72725149	0.89[EUR][1000 genomes]
rs72725151	0.88[EUR][1000 genomes]
rs72725153	0.88[EUR][1000 genomes]
rs72725156	0.84[EUR][1000 genomes]
rs72725157	0.88[EUR][1000 genomes]
rs72725159	0.84[EUR][1000 genomes]
rs72725165	0.87[EUR][1000 genomes]
rs72725168	0.88[EUR][1000 genomes]
rs72725170	0.88[EUR][1000 genomes]
rs72725172	0.84[EUR][1000 genomes]
rs72725174	0.81[EUR][1000 genomes]
rs8006437	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8006492	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8011621	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs8014000	0.83[CEU][hapmap];0.87[YRI][hapmap]
rs8015128	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs8016525	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020795	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8021404	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs8022206	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs9323501	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961700	0.83[YRI][hapmap]
rs9672142	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68386600-68399800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:68392800-68399200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:68392800-68399400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:68395400-68408000	Weak transcription	Ovary	ovary
5	chr14:68396000-68399800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:68396400-68399600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:68397400-68399800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr14:68397400-68400600	Weak transcription	Dnd41	blood
9	chr14:68397800-68400200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:68399000-68400800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr14:68399000-68401200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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