Variant report

Variant	rs28649231
Chromosome Location	chr14:68423215-68423216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68421784..68424768-chr14:69261099..69262609,2	MCF-7	breast:
2	chr14:68421973..68423827-chr14:68427831..68430773,2	K562	blood:
3	chr14:68421406..68425336-chr14:68430124..68433413,6	MCF-7	breast:
4	chr14:68422080..68424333-chr14:69258216..69260851,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10133262	0.83[AMR][1000 genomes]
rs10136790	0.83[AMR][1000 genomes]
rs11158700	0.81[ASN][1000 genomes]
rs11158701	0.81[ASN][1000 genomes]
rs11158716	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11622135	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11624484	0.83[AFR][1000 genomes]
rs11624609	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11626280	0.81[AMR][1000 genomes]
rs11626332	0.81[ASN][1000 genomes]
rs11629073	0.83[AFR][1000 genomes]
rs11848769	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11850946	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11852180	0.83[AMR][1000 genomes]
rs11852208	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12431490	0.81[ASN][1000 genomes]
rs12432558	0.81[ASN][1000 genomes]
rs12433779	0.81[ASN][1000 genomes]
rs12434751	0.81[ASN][1000 genomes]
rs12435554	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12437178	0.82[AMR][1000 genomes]
rs12437276	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17192558	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17192586	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17783304	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2038565	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28488544	0.83[AMR][1000 genomes]
rs28713367	0.81[ASN][1000 genomes]
rs34588410	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34723132	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35803514	0.81[ASN][1000 genomes]
rs4902538	0.82[AMR][1000 genomes]
rs4902539	0.83[AMR][1000 genomes]
rs4902540	0.83[AMR][1000 genomes]
rs6573800	0.84[AMR][1000 genomes]
rs6573801	0.83[AMR][1000 genomes]
rs7142112	0.83[AMR][1000 genomes]
rs7142210	0.83[AMR][1000 genomes]
rs7142860	0.80[AMR][1000 genomes]
rs7145044	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7145771	0.83[AMR][1000 genomes]
rs7146354	0.83[AMR][1000 genomes]
rs7150705	0.81[ASN][1000 genomes]
rs7150903	0.81[ASN][1000 genomes]
rs7151495	0.81[ASN][1000 genomes]
rs7151917	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7154014	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7155985	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7160115	0.83[AMR][1000 genomes]
rs72725127	0.81[ASN][1000 genomes]
rs72725141	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72725149	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72725151	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72725153	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72725156	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72725157	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72725159	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72725165	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72725168	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72725170	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72725172	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72725174	0.81[AMR][1000 genomes]
rs72725185	0.83[AFR][1000 genomes]
rs72725187	0.83[AFR][1000 genomes]
rs72725188	0.83[AFR][1000 genomes]
rs764088	0.81[ASN][1000 genomes]
rs8013677	0.83[AMR][1000 genomes]
rs8015128	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8016525	0.83[AMR][1000 genomes]
rs8021404	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8022206	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9672142	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
3	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:68409600-68430600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68412000-68423800	Weak transcription	Stomach Mucosa	stomach
6	chr14:68412000-68431000	Weak transcription	Small Intestine	intestine
7	chr14:68417400-68428200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr14:68419600-68424800	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:68420000-68424800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:68420200-68423600	Weak transcription	Fetal Stomach	stomach
11	chr14:68420400-68427400	Weak transcription	Ovary	ovary
12	chr14:68420800-68428200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:68422200-68423600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links