Variant report

Variant	rs8022206
Chromosome Location	chr14:68520906-68520907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68519855..68522252-chr14:68526283..68527836,2	MCF-7	breast:
2	chr14:68510807..68512331-chr14:68520245..68522005,2	MCF-7	breast:

Extended variants
information (count: 172 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs10129355	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs10129612	0.80[EUR][1000 genomes]
rs10130829	0.84[EUR][1000 genomes]
rs10132022	0.81[EUR][1000 genomes]
rs10133262	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs10133883	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10136129	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs10136790	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs10136868	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10139548	0.83[EUR][1000 genomes]
rs10140097	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs10140282	0.84[EUR][1000 genomes]
rs10143455	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs10143843	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs10151115	0.81[EUR][1000 genomes]
rs1033686	0.81[CEU][hapmap]
rs10467735	0.84[EUR][1000 genomes]
rs1080956	0.81[EUR][1000 genomes]
rs1080957	0.81[EUR][1000 genomes]
rs1080958	0.81[EUR][1000 genomes]
rs11158701	1.00[CHB][hapmap]
rs11158715	0.80[EUR][1000 genomes]
rs11158716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11158717	0.84[EUR][1000 genomes]
rs11158718	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621638	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs11622135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11622243	0.84[EUR][1000 genomes]
rs11622787	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs11623355	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11623984	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11624484	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11626280	0.84[EUR][1000 genomes]
rs11626332	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11629073	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844529	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs11846344	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs11848187	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11848769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11850191	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs11850946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11852180	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs11852208	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12100584	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs12432193	0.86[ASN][1000 genomes]
rs12432558	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12432681	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12433779	1.00[JPT][hapmap]
rs12435554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12436203	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437178	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs12437276	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12437441	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1274638	1.00[CHD][hapmap]
rs1274643	1.00[CHD][hapmap]
rs1274645	1.00[CHD][hapmap]
rs1290939	1.00[CHD][hapmap]
rs1295782	1.00[CHD][hapmap]
rs1298340	1.00[CHD][hapmap]
rs1314913	1.00[CHD][hapmap]
rs1314915	1.00[CHD][hapmap]
rs1316118	1.00[CHD][hapmap]
rs13329056	0.86[EUR][1000 genomes]
rs1467673	1.00[CHD][hapmap]
rs17104764	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs17104776	0.84[CEU][hapmap]
rs17192558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17192586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1744947	1.00[CHD][hapmap]
rs1744949	1.00[CHD][hapmap]
rs1751382	1.00[CHD][hapmap]
rs17783304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1951631	1.00[CHD][hapmap]
rs1952245	1.00[CHD][hapmap]
rs1958111	1.00[CHD][hapmap]
rs1980654	0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1980655	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2038565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2093358	0.81[EUR][1000 genomes]
rs2208596	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2588809	1.00[CHD][hapmap]
rs2588814	1.00[CHD][hapmap]
rs2588815	1.00[CHD][hapmap]
rs2588821	1.00[CHD][hapmap]
rs2588825	1.00[CHD][hapmap]
rs2588834	1.00[CHD][hapmap]
rs2767365	1.00[CHD][hapmap]
rs28470365	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28474827	0.86[EUR][1000 genomes]
rs28474995	0.83[EUR][1000 genomes]
rs28488544	0.84[EUR][1000 genomes]
rs28509330	0.84[EUR][1000 genomes]
rs28649231	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2877369	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs34409637	1.00[CHD][hapmap]
rs34588410	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34723132	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35517486	0.86[ASN][1000 genomes]
rs4436722	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs4899231	0.81[EUR][1000 genomes]
rs4902535	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs4902536	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs4902538	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs4902539	0.84[EUR][1000 genomes]
rs4902540	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs4902544	0.86[EUR][1000 genomes]
rs4902545	0.81[EUR][1000 genomes]
rs57990032	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60201005	0.86[EUR][1000 genomes]
rs60471554	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6573800	0.84[EUR][1000 genomes]
rs6573801	0.84[EUR][1000 genomes]
rs6573805	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs6573814	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67566613	0.81[EUR][1000 genomes]
rs7141160	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7141450	1.00[JPT][hapmap]
rs7142112	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs7142210	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs7142860	0.84[EUR][1000 genomes]
rs7145044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7145771	0.82[EUR][1000 genomes]
rs7146354	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs7150705	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7150903	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7151495	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7151917	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7154014	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154646	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs7155097	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs7155764	1.00[CHD][hapmap]
rs7155985	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7157185	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs7158544	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs7160115	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs7161069	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs725453	1.00[CHD][hapmap]
rs72725138	0.81[EUR][1000 genomes]
rs72725141	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72725149	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725151	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725153	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725154	0.85[EUR][1000 genomes]
rs72725156	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725157	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725158	0.85[EUR][1000 genomes]
rs72725159	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725160	0.85[EUR][1000 genomes]
rs72725163	0.85[EUR][1000 genomes]
rs72725165	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725168	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725170	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725172	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725173	0.90[EUR][1000 genomes]
rs72725174	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72725183	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725185	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725186	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725187	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725188	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006437	0.84[EUR][1000 genomes]
rs8006492	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8011621	0.81[EUR][1000 genomes]
rs8013677	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs8015128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016525	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs8020795	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs8021404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672142	0.83[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv977622	chr14:68514820-68532469	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Platelet counts	22139419	GWAS catalog

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68514800-68522600	Weak transcription	HSMM	muscle
2	chr14:68514800-68527000	Weak transcription	Ovary	ovary
3	chr14:68519800-68521600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links