Variant report

Variant	rs72725159
Chromosome Location	chr14:68477263-68477264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68476385..68478985-chr14:69260389..69262705,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs10129355	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10130829	0.84[EUR][1000 genomes]
rs10132022	0.80[EUR][1000 genomes]
rs10133262	0.84[EUR][1000 genomes]
rs10133883	0.82[EUR][1000 genomes]
rs10136129	0.84[EUR][1000 genomes]
rs10136790	0.84[EUR][1000 genomes]
rs10136868	0.81[EUR][1000 genomes]
rs10139548	0.82[EUR][1000 genomes]
rs10140097	0.85[EUR][1000 genomes]
rs10140282	0.84[EUR][1000 genomes]
rs10143455	0.84[EUR][1000 genomes]
rs10143843	0.84[EUR][1000 genomes]
rs1033686	0.85[EUR][1000 genomes]
rs10467735	0.84[EUR][1000 genomes]
rs11158700	0.87[ASN][1000 genomes]
rs11158701	0.87[ASN][1000 genomes]
rs11158716	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158718	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11621638	0.94[EUR][1000 genomes]
rs11622135	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622243	0.84[EUR][1000 genomes]
rs11622787	0.85[EUR][1000 genomes]
rs11623355	0.82[EUR][1000 genomes]
rs11623984	0.82[EUR][1000 genomes]
rs11624484	0.87[ASN][1000 genomes]
rs11624609	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11626280	0.83[EUR][1000 genomes]
rs11626332	0.87[ASN][1000 genomes]
rs11629073	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11844529	0.84[EUR][1000 genomes]
rs11846344	0.84[EUR][1000 genomes]
rs11848187	0.82[EUR][1000 genomes]
rs11848769	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850191	0.84[EUR][1000 genomes]
rs11850946	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11852180	0.84[EUR][1000 genomes]
rs11852208	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100584	0.84[EUR][1000 genomes]
rs12431490	0.87[ASN][1000 genomes]
rs12432558	0.87[ASN][1000 genomes]
rs12432681	0.82[EUR][1000 genomes]
rs12433779	0.86[ASN][1000 genomes]
rs12434751	0.87[ASN][1000 genomes]
rs12435554	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12436203	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12437178	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12437276	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13329056	0.85[EUR][1000 genomes]
rs17104764	0.84[EUR][1000 genomes]
rs17192558	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17192586	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17783304	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980654	0.82[EUR][1000 genomes]
rs1980655	0.82[EUR][1000 genomes]
rs2038565	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2093358	0.80[EUR][1000 genomes]
rs2208596	0.85[EUR][1000 genomes]
rs28470365	0.81[EUR][1000 genomes]
rs28474995	0.82[EUR][1000 genomes]
rs28488544	0.84[EUR][1000 genomes]
rs28509330	0.84[EUR][1000 genomes]
rs28649231	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28713367	0.87[ASN][1000 genomes]
rs2877369	0.84[EUR][1000 genomes]
rs34588410	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34723132	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34759521	0.80[ASN][1000 genomes]
rs35803514	0.86[ASN][1000 genomes]
rs4436722	0.84[EUR][1000 genomes]
rs4902535	0.84[EUR][1000 genomes]
rs4902536	0.84[EUR][1000 genomes]
rs4902538	0.83[EUR][1000 genomes]
rs4902539	0.84[EUR][1000 genomes]
rs4902540	0.84[EUR][1000 genomes]
rs4902544	0.85[EUR][1000 genomes]
rs57990032	0.85[EUR][1000 genomes]
rs60201005	0.85[EUR][1000 genomes]
rs60471554	0.82[EUR][1000 genomes]
rs6573800	0.84[EUR][1000 genomes]
rs6573801	0.84[EUR][1000 genomes]
rs6573805	0.85[EUR][1000 genomes]
rs6573814	0.82[EUR][1000 genomes]
rs7142112	0.84[EUR][1000 genomes]
rs7142210	0.84[EUR][1000 genomes]
rs7142860	0.84[EUR][1000 genomes]
rs7145044	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7145771	0.81[EUR][1000 genomes]
rs7146354	0.84[EUR][1000 genomes]
rs7150705	0.87[ASN][1000 genomes]
rs7150903	0.87[ASN][1000 genomes]
rs7151495	0.87[ASN][1000 genomes]
rs7151917	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7154014	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7154646	0.84[EUR][1000 genomes]
rs7155097	0.82[EUR][1000 genomes]
rs7155985	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7157185	0.84[EUR][1000 genomes]
rs7158544	0.85[EUR][1000 genomes]
rs7160115	0.84[EUR][1000 genomes]
rs7161069	0.82[EUR][1000 genomes]
rs72725127	0.87[ASN][1000 genomes]
rs72725138	0.91[EUR][1000 genomes]
rs72725141	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725149	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725151	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725153	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725154	0.94[EUR][1000 genomes]
rs72725156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725157	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725158	0.94[EUR][1000 genomes]
rs72725160	0.94[EUR][1000 genomes]
rs72725163	0.94[EUR][1000 genomes]
rs72725165	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725168	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725170	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725172	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725173	0.89[EUR][1000 genomes]
rs72725174	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72725183	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725185	0.87[ASN][1000 genomes]
rs72725186	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725187	0.87[ASN][1000 genomes]
rs72725188	0.87[ASN][1000 genomes]
rs764088	0.87[ASN][1000 genomes]
rs8006437	0.84[EUR][1000 genomes]
rs8006492	0.82[EUR][1000 genomes]
rs8013677	0.84[EUR][1000 genomes]
rs8015128	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8016525	0.84[EUR][1000 genomes]
rs8020795	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8021404	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8022206	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9672142	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68468000-68478200	Weak transcription	Fetal Lung	lung
2	chr14:68468400-68478400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:68472600-68477800	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:68476000-68478200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr14:68476200-68477800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:68476200-68478000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:68476400-68477800	Weak transcription	Hela-S3	cervix
8	chr14:68476600-68477600	Enhancers	A549	lung
9	chr14:68476600-68484200	Enhancers	Rectal Smooth Muscle	rectum
10	chr14:68477000-68477400	Weak transcription	Stomach Mucosa	stomach

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