Variant report

Variant	rs34723132
Chromosome Location	chr14:68383635-68383636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68379836..68381717-chr14:68383217..68385933,2	MCF-7	breast:
2	chr14:68380228..68384149-chr14:68387361..68390165,3	MCF-7	breast:

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs10129355	0.88[EUR][1000 genomes]
rs10129612	0.82[EUR][1000 genomes]
rs10130829	0.89[EUR][1000 genomes]
rs10132022	0.83[EUR][1000 genomes]
rs10133262	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10133883	0.84[EUR][1000 genomes]
rs10136129	0.89[EUR][1000 genomes]
rs10136174	0.84[EUR][1000 genomes]
rs10136790	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10136868	0.83[EUR][1000 genomes]
rs10139548	0.88[EUR][1000 genomes]
rs10140097	0.88[EUR][1000 genomes]
rs10140282	0.89[EUR][1000 genomes]
rs10143455	0.86[EUR][1000 genomes]
rs10143843	0.89[EUR][1000 genomes]
rs10144995	0.84[EUR][1000 genomes]
rs1033686	0.85[EUR][1000 genomes]
rs10467735	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11158700	0.87[ASN][1000 genomes]
rs11158701	0.87[ASN][1000 genomes]
rs11158715	0.82[EUR][1000 genomes]
rs11158716	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11621638	0.87[EUR][1000 genomes]
rs11622135	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11622243	0.89[EUR][1000 genomes]
rs11622787	0.88[EUR][1000 genomes]
rs11623355	0.84[EUR][1000 genomes]
rs11623984	0.84[EUR][1000 genomes]
rs11624484	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11624609	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11626280	0.88[EUR][1000 genomes]
rs11626332	0.87[ASN][1000 genomes]
rs11629073	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11844529	0.89[EUR][1000 genomes]
rs11846344	0.89[EUR][1000 genomes]
rs11848187	0.83[EUR][1000 genomes]
rs11848769	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11850191	0.89[EUR][1000 genomes]
rs11850946	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11852180	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11852208	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12100584	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12431490	0.87[ASN][1000 genomes]
rs12431697	0.83[EUR][1000 genomes]
rs12432558	0.87[ASN][1000 genomes]
rs12432681	0.84[EUR][1000 genomes]
rs12433779	0.86[ASN][1000 genomes]
rs12434751	0.87[ASN][1000 genomes]
rs12435554	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437178	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12437276	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13329056	0.88[EUR][1000 genomes]
rs17104764	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17104776	0.82[EUR][1000 genomes]
rs17104800	0.84[EUR][1000 genomes]
rs17192558	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17192586	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17783304	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1980654	0.84[EUR][1000 genomes]
rs1980655	0.84[EUR][1000 genomes]
rs2009191	0.84[EUR][1000 genomes]
rs2038565	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2093358	0.83[EUR][1000 genomes]
rs2208596	0.88[EUR][1000 genomes]
rs28444723	0.84[EUR][1000 genomes]
rs28470365	0.84[EUR][1000 genomes]
rs28474827	0.81[EUR][1000 genomes]
rs28474995	0.85[EUR][1000 genomes]
rs28488544	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28509330	0.89[EUR][1000 genomes]
rs28649231	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28713367	0.87[ASN][1000 genomes]
rs2877369	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34588410	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34759521	0.80[ASN][1000 genomes]
rs35803514	0.86[ASN][1000 genomes]
rs4436722	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902535	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902536	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902538	0.89[EUR][1000 genomes]
rs4902539	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902540	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4902544	0.88[EUR][1000 genomes]
rs57990032	0.88[EUR][1000 genomes]
rs58151429	0.84[EUR][1000 genomes]
rs60201005	0.88[EUR][1000 genomes]
rs60471554	0.84[EUR][1000 genomes]
rs6573800	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6573801	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6573805	0.88[EUR][1000 genomes]
rs6573814	0.84[EUR][1000 genomes]
rs7142112	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7142210	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7142860	0.89[EUR][1000 genomes]
rs7145044	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145771	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7146354	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7150705	0.87[ASN][1000 genomes]
rs7150903	0.87[ASN][1000 genomes]
rs7151495	0.87[ASN][1000 genomes]
rs7151917	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154014	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7154646	0.89[EUR][1000 genomes]
rs7155097	0.88[EUR][1000 genomes]
rs7155840	0.84[EUR][1000 genomes]
rs7155985	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157185	0.89[EUR][1000 genomes]
rs7158544	0.88[EUR][1000 genomes]
rs7160115	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7161069	0.84[EUR][1000 genomes]
rs72725127	0.87[ASN][1000 genomes]
rs72725138	0.90[EUR][1000 genomes]
rs72725141	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72725149	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725151	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725153	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725154	0.87[EUR][1000 genomes]
rs72725156	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725157	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725158	0.87[EUR][1000 genomes]
rs72725159	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725160	0.87[EUR][1000 genomes]
rs72725163	0.87[EUR][1000 genomes]
rs72725165	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72725168	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72725170	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72725172	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72725173	0.82[EUR][1000 genomes]
rs72725174	0.87[EUR][1000 genomes]
rs72725185	0.82[AFR][1000 genomes]
rs72725187	0.82[AFR][1000 genomes]
rs72725188	0.82[AFR][1000 genomes]
rs764088	0.87[ASN][1000 genomes]
rs8006437	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8006492	0.84[EUR][1000 genomes]
rs8013677	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8015128	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8016525	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8020795	0.87[EUR][1000 genomes]
rs8021404	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8022206	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9323501	0.84[EUR][1000 genomes]
rs9672142	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68375600-68385400	Weak transcription	Fetal Kidney	kidney
2	chr14:68378600-68385400	Weak transcription	Fetal Lung	lung
3	chr14:68382200-68383800	Enhancers	Fetal Stomach	stomach
4	chr14:68382200-68388400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:68382600-68384200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:68382800-68383800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:68383000-68384400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:68383200-68385400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:68383200-68385800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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