Variant report

Variant	rs10136174
Chromosome Location	chr14:68452519-68452520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68439178..68441546-chr14:68451372..68454221,2	MCF-7	breast:
2	chr14:68442494..68447926-chr14:68448163..68454311,7	MCF-7	breast:

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10129355	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10129612	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10130829	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10132022	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10133262	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10133883	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10136129	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136790	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136868	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10139548	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10140097	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10140282	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143455	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10143843	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144995	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148527	0.95[ASN][1000 genomes]
rs10151115	0.80[EUR][1000 genomes]
rs10151387	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10467735	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1080956	0.80[EUR][1000 genomes]
rs1080957	0.80[EUR][1000 genomes]
rs1080958	0.80[EUR][1000 genomes]
rs10873210	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158715	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11158716	0.81[EUR][1000 genomes]
rs11158717	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11622135	0.83[EUR][1000 genomes]
rs11622243	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622787	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623355	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11623984	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11624609	0.82[EUR][1000 genomes]
rs11626280	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11844529	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846344	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848187	0.84[EUR][1000 genomes]
rs11848769	0.83[EUR][1000 genomes]
rs11850191	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850946	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11852180	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11852208	0.82[EUR][1000 genomes]
rs12100584	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12431697	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12432681	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12435554	0.84[EUR][1000 genomes]
rs12437178	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437276	0.83[EUR][1000 genomes]
rs13329056	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104764	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17104776	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17104800	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17192558	0.84[EUR][1000 genomes]
rs17192586	0.83[EUR][1000 genomes]
rs17783304	0.84[EUR][1000 genomes]
rs1950767	0.95[ASN][1000 genomes]
rs1980654	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1980655	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2009191	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2093358	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2208596	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28444723	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28470365	0.82[EUR][1000 genomes]
rs28474827	0.92[EUR][1000 genomes]
rs28474995	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28488544	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28509330	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2877369	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28855496	0.95[ASN][1000 genomes]
rs34588410	0.83[EUR][1000 genomes]
rs34723132	0.84[EUR][1000 genomes]
rs4436722	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4899231	0.80[EUR][1000 genomes]
rs4902533	0.95[ASN][1000 genomes]
rs4902535	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902536	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902538	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902539	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902540	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902544	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4902545	0.81[EUR][1000 genomes]
rs57990032	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58151429	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60201005	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60415085	0.98[ASN][1000 genomes]
rs60471554	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6573800	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6573801	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573805	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6573814	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67566613	0.80[EUR][1000 genomes]
rs7142112	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7142210	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7142860	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7145044	0.84[EUR][1000 genomes]
rs7145771	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7146354	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7151917	0.84[EUR][1000 genomes]
rs7154646	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155097	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155840	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7155985	0.84[EUR][1000 genomes]
rs7157185	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158544	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7160115	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7161069	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72725141	0.84[EUR][1000 genomes]
rs72725149	0.84[EUR][1000 genomes]
rs72725151	0.83[EUR][1000 genomes]
rs72725153	0.83[EUR][1000 genomes]
rs72725157	0.83[EUR][1000 genomes]
rs72725165	0.82[EUR][1000 genomes]
rs72725168	0.83[EUR][1000 genomes]
rs72725170	0.83[EUR][1000 genomes]
rs8006437	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8006492	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8011621	0.81[EUR][1000 genomes]
rs8013677	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8016525	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8020795	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9323501	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9672142	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68442600-68454400	Weak transcription	Fetal Kidney	kidney
2	chr14:68445800-68454600	Weak transcription	Ovary	ovary
3	chr14:68449800-68454400	Weak transcription	HMEC	breast
4	chr14:68450000-68453600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr14:68450200-68453000	Weak transcription	Fetal Lung	lung
6	chr14:68450200-68454000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:68450200-68465400	Weak transcription	HepG2	liver
8	chr14:68450400-68452800	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:68450600-68457000	Weak transcription	Stomach Mucosa	stomach
10	chr14:68451000-68454000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:68451000-68454000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:68451200-68455000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:68451400-68452600	Weak transcription	NHLF	lung
14	chr14:68451400-68453400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:68451800-68455000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr14:68452200-68454400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr14:68452400-68452600	Weak transcription	Fetal Stomach	stomach
18	chr14:68452400-68453000	Enhancers	NHDF-Ad	bronchial

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