Variant report

Variant	rs10873210
Chromosome Location	chr14:68400465-68400466
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68400449..68401133-chr14:69310362..69311096,2	MCF-7	breast:
2	chr14:68399385..68401473-chr14:68675864..68677382,2	MCF-7	breast:
3	chr14:68400277..68402859-chr14:69281865..69283593,2	MCF-7	breast:
4	chr14:68400013..68402896-chr14:69251166..69253884,2	MCF-7	breast:
5	chr14:68399422..68401519-chr14:69254467..69256728,3	MCF-7	breast:
6	chr14:68398959..68401535-chr14:69255427..69257747,2	MCF-7	breast:
7	chr14:68398984..68402674-chr14:69258242..69262759,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10129355	0.85[CEU][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10129612	0.90[CEU][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10130829	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10132022	0.90[CEU][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs10133262	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10136129	0.85[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10136174	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10136790	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10140097	0.85[CEU][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10140282	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10143455	0.84[CEU][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10143843	0.85[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10144995	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10148527	0.90[ASN][1000 genomes]
rs10151387	0.86[ASN][1000 genomes]
rs10467735	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158715	0.89[CEU][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11158717	0.85[EUR][1000 genomes]
rs11622243	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11622787	0.85[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11623355	0.84[CEU][hapmap]
rs11626280	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11844529	0.85[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11846344	0.84[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11850191	0.84[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11852180	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12100584	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12431697	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12437178	0.84[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13329056	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17104764	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17104776	0.85[CEU][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17104800	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1950767	0.90[ASN][1000 genomes]
rs1980654	0.84[CEU][hapmap]
rs1980655	0.85[CEU][hapmap]
rs2009191	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2093358	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2208596	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs28444723	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28474827	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs28474995	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28488544	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28509330	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2877369	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28855496	0.90[ASN][1000 genomes]
rs4436722	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902533	0.90[ASN][1000 genomes]
rs4902535	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902536	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902538	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902539	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902540	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902544	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57990032	0.82[EUR][1000 genomes]
rs58151429	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60201005	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60415085	0.86[ASN][1000 genomes]
rs6573800	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6573801	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573805	0.84[CEU][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6573814	0.85[CEU][hapmap]
rs7142112	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7142210	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7142860	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7145771	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7146354	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7154646	0.84[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7155097	0.85[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7155840	0.95[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7157185	0.85[CEU][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7158544	0.85[CEU][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7160115	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8006437	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8013677	0.83[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8016525	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8020795	0.84[CEU][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9323501	0.90[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9672142	0.84[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68395400-68408000	Weak transcription	Ovary	ovary
2	chr14:68397400-68400600	Weak transcription	Dnd41	blood
3	chr14:68399000-68400800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr14:68399000-68401200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:68399200-68402200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:68399200-68402400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr14:68399400-68400600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr14:68399400-68401800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:68399600-68401800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr14:68399600-68401800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:68399600-68401800	Enhancers	Fetal Stomach	stomach
12	chr14:68399600-68402200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr14:68399600-68402200	Enhancers	Fetal Thymus	thymus
14	chr14:68399800-68401000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr14:68399800-68401000	Enhancers	Fetal Muscle Leg	muscle
16	chr14:68399800-68401200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr14:68399800-68401200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr14:68399800-68401600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:68399800-68401800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr14:68399800-68402400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr14:68400000-68400800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:68400000-68400800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr14:68400000-68400800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:68400000-68401400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr14:68400000-68401800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:68400000-68401800	Enhancers	Fetal Lung	lung
27	chr14:68400000-68401800	Enhancers	Thymus	Thymus
28	chr14:68400200-68400600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:68400200-68400600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr14:68400200-68400800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:68400200-68401000	Enhancers	Fetal Kidney	kidney
32	chr14:68400200-68401400	Enhancers	Adipose Nuclei	Adipose
33	chr14:68400200-68401600	Enhancers	Primary hematopoietic stem cells	blood
34	chr14:68400200-68401600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:68400200-68401600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:68400200-68401600	Enhancers	A549	lung
37	chr14:68400200-68401600	Enhancers	HUVEC	blood vessel
38	chr14:68400200-68401800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr14:68400200-68404200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr14:68400400-68400600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
41	chr14:68400400-68401000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr14:68400400-68401200	Enhancers	HMEC	breast
43	chr14:68400400-68401600	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr14:68400400-68401800	Enhancers	Colon Smooth Muscle	Colon
45	chr14:68400400-68407000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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