Variant report

Variant	rs9323501
Chromosome Location	chr14:68425060-68425061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68424600..68427431-chr14:68428882..68430804,3	MCF-7	breast:
2	chr14:68417833..68419421-chr14:68423869..68425506,2	MCF-7	breast:
3	chr14:68423955..68425874-chr14:68607515..68609143,2	MCF-7	breast:
4	chr14:68421406..68425336-chr14:68430124..68433413,6	MCF-7	breast:
5	chr14:68425055..68428932-chr14:69256531..69260317,3	MCF-7	breast:
6	chr14:68412401..68415259-chr14:68423760..68426375,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 198 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:197)

rs_ID	r²[population]
rs10129355	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10129612	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10130829	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10132022	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10132711	0.86[JPT][hapmap]
rs10132828	0.86[JPT][hapmap]
rs10133262	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133652	0.82[JPT][hapmap]
rs10133883	0.87[EUR][1000 genomes]
rs10135316	0.82[JPT][hapmap]
rs10135925	0.82[JPT][hapmap]
rs10136129	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136174	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136790	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136868	0.85[EUR][1000 genomes]
rs10137712	0.82[JPT][hapmap]
rs10139236	0.81[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10139386	0.81[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10139548	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10140097	0.95[CEU][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10140282	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10143219	0.82[JPT][hapmap]
rs10143455	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10143843	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10143895	0.82[JPT][hapmap]
rs10144128	0.82[JPT][hapmap]
rs10144995	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10145884	0.82[JPT][hapmap]
rs10146719	0.82[JPT][hapmap]
rs10146766	0.82[JPT][hapmap]
rs10146831	0.88[JPT][hapmap]
rs10147569	0.82[JPT][hapmap]
rs10148527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10148893	0.82[JPT][hapmap]
rs10151123	0.82[JPT][hapmap]
rs10151317	0.82[JPT][hapmap]
rs10151387	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10450891	0.81[JPT][hapmap]
rs10467735	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10483805	0.80[CHB][hapmap]
rs1080957	0.81[CEU][hapmap]
rs1080958	0.81[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10873210	0.90[CEU][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158710	0.82[JPT][hapmap]
rs11158715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158716	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs11158717	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11158719	0.81[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs1118397	0.82[JPT][hapmap]
rs11622135	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs11622243	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11622787	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11623355	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs11623467	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs11623984	0.87[EUR][1000 genomes]
rs11624609	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11626280	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844529	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11846344	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11847628	0.80[CHB][hapmap]
rs11848187	0.83[EUR][1000 genomes]
rs11848769	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs11850191	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11850946	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs11852180	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11852208	0.82[EUR][1000 genomes]
rs12100584	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12431697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432681	0.87[EUR][1000 genomes]
rs12435554	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs12437043	0.86[CHB][hapmap]
rs12437178	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437276	0.83[EUR][1000 genomes]
rs13329056	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1548264	0.81[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1548265	0.81[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs17104764	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104774	0.82[JPT][hapmap]
rs17104776	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17104783	0.88[JPT][hapmap]
rs17104786	0.82[JPT][hapmap]
rs17104793	0.81[JPT][hapmap]
rs17104796	0.82[JPT][hapmap]
rs17104799	0.81[JPT][hapmap]
rs17104800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104823	0.82[JPT][hapmap]
rs17104824	0.82[JPT][hapmap]
rs17104827	0.82[JPT][hapmap]
rs17104829	0.82[JPT][hapmap]
rs17104889	0.81[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs17104908	0.80[CHB][hapmap];0.91[JPT][hapmap]
rs17192558	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs17192586	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs17783202	0.82[JPT][hapmap]
rs17783304	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs181572	0.80[CHB][hapmap]
rs181575	0.80[CHB][hapmap]
rs1950766	0.82[JPT][hapmap]
rs1950767	0.98[ASN][1000 genomes]
rs1956346	0.80[CHB][hapmap]
rs1980654	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs1980655	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs2009191	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038565	0.82[CEU][hapmap]
rs2093358	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2180537	0.82[JPT][hapmap]
rs2208596	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2235962	0.80[CHB][hapmap]
rs2235963	0.80[CHB][hapmap]
rs2235965	0.80[CHB][hapmap]
rs2295108	0.80[CHB][hapmap]
rs2588832	0.80[CHB][hapmap]
rs2588833	0.80[CHB][hapmap]
rs28444723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28470365	0.80[EUR][1000 genomes]
rs28474827	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28474995	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28488544	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28509330	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2877369	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28855496	0.98[ASN][1000 genomes]
rs33949561	0.85[AFR][1000 genomes]
rs34588410	0.83[EUR][1000 genomes]
rs34723132	0.84[EUR][1000 genomes]
rs372143	0.80[CHB][hapmap]
rs401021	0.80[CHB][hapmap]
rs408156	0.80[CHB][hapmap]
rs431649	0.80[CHB][hapmap]
rs437585	0.80[CHB][hapmap]
rs4436722	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4569184	0.80[CHB][hapmap]
rs4902533	0.98[ASN][1000 genomes]
rs4902535	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902536	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902538	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902539	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902540	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902544	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57990032	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58151429	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60201005	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60415085	0.95[ASN][1000 genomes]
rs60471554	0.87[EUR][1000 genomes]
rs6573800	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573801	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573802	0.81[JPT][hapmap]
rs6573805	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573814	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs7142112	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142210	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142860	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145044	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs7145771	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146354	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147296	0.82[JPT][hapmap]
rs7149460	0.82[JPT][hapmap]
rs7150168	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7151917	0.84[EUR][1000 genomes]
rs7154646	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7154725	0.82[JPT][hapmap]
rs7155097	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7155840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7155985	0.84[EUR][1000 genomes]
rs7157185	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7157550	0.82[JPT][hapmap]
rs7157720	0.82[JPT][hapmap]
rs7158544	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7160115	0.82[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160196	0.80[CHB][hapmap]
rs7161069	0.87[EUR][1000 genomes]
rs72725141	0.84[EUR][1000 genomes]
rs72725149	0.84[EUR][1000 genomes]
rs72725151	0.83[EUR][1000 genomes]
rs72725153	0.83[EUR][1000 genomes]
rs72725157	0.83[EUR][1000 genomes]
rs72725165	0.82[EUR][1000 genomes]
rs72725168	0.83[EUR][1000 genomes]
rs72725170	0.83[EUR][1000 genomes]
rs8006089	0.80[CHB][hapmap]
rs8006175	0.82[JPT][hapmap]
rs8006437	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8006492	0.87[EUR][1000 genomes]
rs8008791	0.82[JPT][hapmap]
rs8013677	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014000	0.81[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs8015128	0.82[CEU][hapmap]
rs8015741	0.82[JPT][hapmap]
rs8016525	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020512	0.82[JPT][hapmap]
rs8020795	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8021404	0.82[CEU][hapmap]
rs9323502	0.86[AFR][1000 genomes]
rs9652362	0.82[JPT][hapmap]
rs9652363	0.82[JPT][hapmap]
rs9652364	0.82[JPT][hapmap]
rs9672142	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9796374	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68408600-68430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68408600-68435400	Weak transcription	Thymus	Thymus
3	chr14:68409400-68434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:68409600-68430600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68412000-68431000	Weak transcription	Small Intestine	intestine
6	chr14:68417400-68428200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:68420400-68427400	Weak transcription	Ovary	ovary
8	chr14:68420800-68428200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:68423600-68425400	Enhancers	Fetal Stomach	stomach
10	chr14:68423600-68425600	Enhancers	Fetal Lung	lung
11	chr14:68424200-68427000	Weak transcription	Stomach Mucosa	stomach
12	chr14:68424200-68427400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:68424800-68425200	Enhancers	Colon Smooth Muscle	Colon
14	chr14:68424800-68425400	Enhancers	Rectal Smooth Muscle	rectum

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