Variant report

Variant	rs9323502
Chromosome Location	chr14:68548476-68548477
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68546114..68557712-chr14:68603959..68613316,23	MCF-7	breast:
2	chr14:68409337..68410924-chr14:68547363..68550057,2	MCF-7	breast:
3	chr14:68548399..68550785-chr14:68554801..68556437,2	K562	blood:
4	chr14:68547346..68549443-chr14:68606508..68608994,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10129355	0.81[ASN][1000 genomes]
rs10129612	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10132022	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10133883	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10136868	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10137233	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139236	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139386	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140097	0.81[ASN][1000 genomes]
rs10140420	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140493	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143455	0.81[ASN][1000 genomes]
rs10144995	0.85[AFR][1000 genomes]
rs10151115	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080956	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080957	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080958	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158715	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11158717	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158719	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623355	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11623467	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623984	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11624209	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624484	0.81[EUR][1000 genomes]
rs11628745	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848187	0.89[ASN][1000 genomes]
rs12432681	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12437043	0.87[ASN][1000 genomes]
rs1548264	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1548265	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104889	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104908	0.86[ASN][1000 genomes]
rs1810639	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980654	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1980655	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2093358	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2208596	0.84[ASN][1000 genomes]
rs2588831	0.84[AMR][1000 genomes]
rs2588832	0.82[AMR][1000 genomes]
rs2588835	0.81[AMR][1000 genomes]
rs2767366	0.84[AMR][1000 genomes]
rs2767367	0.82[AMR][1000 genomes]
rs28444723	0.84[AFR][1000 genomes]
rs28470365	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28474827	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33949561	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs424032	0.82[AMR][1000 genomes]
rs4899231	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899232	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902544	0.81[ASN][1000 genomes]
rs4902545	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902547	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57069083	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57990032	0.84[ASN][1000 genomes]
rs60471554	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573805	0.81[ASN][1000 genomes]
rs6573814	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67566613	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68139749	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150168	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7151235	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7155840	0.86[AFR][1000 genomes]
rs7156822	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7158544	0.81[ASN][1000 genomes]
rs7161069	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72725185	0.82[EUR][1000 genomes]
rs72725187	0.82[EUR][1000 genomes]
rs72725188	0.82[EUR][1000 genomes]
rs72725190	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006492	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8011621	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014000	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020795	0.81[ASN][1000 genomes]
rs9323501	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68552400	Weak transcription	Ovary	ovary
2	chr14:68542200-68555000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:68542600-68551000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:68542600-68552400	Weak transcription	Lung	lung
5	chr14:68542800-68552000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:68542800-68552400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:68542800-68555400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:68543800-68549200	Weak transcription	NHEK	skin
9	chr14:68544000-68549200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:68544000-68550600	Weak transcription	Fetal Intestine Small	intestine
11	chr14:68544000-68555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:68545800-68555800	Weak transcription	Small Intestine	intestine
13	chr14:68546200-68554800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr14:68546400-68548600	Enhancers	Primary B cells from peripheral blood	blood
15	chr14:68546600-68548600	Enhancers	A549	lung
16	chr14:68546800-68548600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr14:68547000-68552400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:68547200-68548800	Enhancers	Fetal Lung	lung
19	chr14:68547200-68551000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:68547200-68567400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:68547400-68549200	Enhancers	Primary hematopoietic stem cells	blood
22	chr14:68547400-68551400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr14:68547400-68551800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr14:68547400-68552200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:68547400-68552200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr14:68547400-68555000	Weak transcription	Psoas Muscle	Psoas
27	chr14:68547600-68554000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr14:68547800-68548600	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr14:68547800-68551800	Weak transcription	HepG2	liver
30	chr14:68548000-68548600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:68548000-68548600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr14:68548000-68548600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr14:68548400-68552200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr14:68548400-68552800	Weak transcription	Colon Smooth Muscle	Colon

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