Variant report

Variant	rs57069083
Chromosome Location	chr14:68538875-68538876
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10133883	0.81[EUR][1000 genomes]
rs10137233	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10139236	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10139386	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10140420	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10140493	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10151115	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1080956	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1080957	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1080958	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11158718	0.81[EUR][1000 genomes]
rs11158719	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11623355	0.81[EUR][1000 genomes]
rs11623467	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11623984	0.81[EUR][1000 genomes]
rs11624209	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11624484	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11628745	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11629073	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12432681	0.81[EUR][1000 genomes]
rs12436203	0.81[EUR][1000 genomes]
rs1548264	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1548265	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17104889	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1810639	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1980654	0.81[EUR][1000 genomes]
rs1980655	0.81[EUR][1000 genomes]
rs33949561	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4899231	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4899232	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902545	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4902547	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60471554	0.81[EUR][1000 genomes]
rs6573814	0.81[EUR][1000 genomes]
rs67566613	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs68139749	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7150168	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7161069	0.81[EUR][1000 genomes]
rs72725183	0.81[EUR][1000 genomes]
rs72725185	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72725186	0.81[EUR][1000 genomes]
rs72725187	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72725188	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72725190	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8006492	0.81[EUR][1000 genomes]
rs8011621	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8014000	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9323502	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68544000	Weak transcription	Aorta	Aorta
2	chr14:68532400-68552400	Weak transcription	Ovary	ovary
3	chr14:68538200-68543600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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