Variant report

Variant	rs72725190
Chromosome Location	chr14:68552836-68552837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68550358..68553138-chr14:68762603..68764718,2	MCF-7	breast:
2	chr14:68546114..68557712-chr14:68603959..68613316,23	MCF-7	breast:
3	chr14:68552453..68555171-chr14:69280931..69283453,2	MCF-7	breast:
4	chr14:68410049..68412875-chr14:68551981..68554163,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10129355	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10129612	0.81[ASN][1000 genomes]
rs10130829	0.81[EUR][1000 genomes]
rs10132022	0.84[ASN][1000 genomes]
rs10133883	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10136129	0.81[EUR][1000 genomes]
rs10136868	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10137233	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139236	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139386	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139548	0.81[AFR][1000 genomes]
rs10140097	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10140282	0.81[EUR][1000 genomes]
rs10140420	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140493	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143455	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10143843	0.81[EUR][1000 genomes]
rs10151115	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080956	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080957	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080958	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158715	0.81[ASN][1000 genomes]
rs11158717	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158718	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11158719	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622243	0.81[EUR][1000 genomes]
rs11622787	0.82[EUR][1000 genomes]
rs11623355	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11623467	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623984	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11624209	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624484	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11628745	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629073	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11844529	0.81[EUR][1000 genomes]
rs11846344	0.81[EUR][1000 genomes]
rs11848187	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11850191	0.81[EUR][1000 genomes]
rs11852180	0.81[EUR][1000 genomes]
rs12432681	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12436203	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12437043	0.87[ASN][1000 genomes]
rs12437178	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13329056	0.82[EUR][1000 genomes]
rs1548264	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1548265	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104889	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104908	0.86[ASN][1000 genomes]
rs1810639	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980654	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1980655	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2093358	0.81[ASN][1000 genomes]
rs2208596	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28470365	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28474827	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28509330	0.81[EUR][1000 genomes]
rs33949561	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899231	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899232	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902540	0.81[EUR][1000 genomes]
rs4902544	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4902545	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57069083	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57990032	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60201005	0.82[EUR][1000 genomes]
rs60471554	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573805	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6573814	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67566613	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68139749	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150168	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7151235	0.82[ASN][1000 genomes]
rs7154646	0.81[EUR][1000 genomes]
rs7156822	0.87[ASN][1000 genomes]
rs7157185	0.81[EUR][1000 genomes]
rs7158544	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7160115	0.81[EUR][1000 genomes]
rs7161069	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72725183	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72725185	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72725186	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72725187	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72725188	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8006492	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8011621	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014000	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020795	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9323502	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672142	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68542200-68555000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr14:68542800-68555400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:68544000-68555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:68545800-68555800	Weak transcription	Small Intestine	intestine
5	chr14:68546200-68554800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:68547200-68567400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:68547400-68555000	Weak transcription	Psoas Muscle	Psoas
8	chr14:68547600-68554000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:68549200-68554000	Enhancers	Fetal Lung	lung
10	chr14:68549200-68555400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:68549600-68555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:68550000-68554800	Weak transcription	NHEK	skin
13	chr14:68550200-68555000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr14:68550800-68553000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:68551400-68555000	Weak transcription	Fetal Kidney	kidney
16	chr14:68551400-68555200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:68551600-68553000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr14:68551800-68553200	Enhancers	HepG2	liver
19	chr14:68551800-68553400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr14:68552000-68553000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr14:68552000-68553000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr14:68552000-68553200	Enhancers	Fetal Intestine Small	intestine
23	chr14:68552000-68553400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr14:68552200-68553000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:68552200-68553200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr14:68552200-68553200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr14:68552400-68553000	Enhancers	Ovary	ovary
28	chr14:68552400-68553200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr14:68552400-68553200	Enhancers	Lung	lung
30	chr14:68552400-68553200	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr14:68552400-68553200	Enhancers	Stomach Mucosa	stomach
32	chr14:68552400-68553400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:68552400-68553400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr14:68552400-68553400	Enhancers	Fetal Intestine Large	intestine
35	chr14:68552400-68553400	Enhancers	Pancreas	Pancrea
36	chr14:68552600-68553200	Enhancers	Gastric	stomach
37	chr14:68552600-68554800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr14:68552800-68553400	Active TSS	Colon Smooth Muscle	Colon
39	chr14:68552800-68554000	Weak transcription	A549	lung
40	chr14:68552800-68554200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr14:68552800-68555000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr14:68552800-68555400	Weak transcription	H9 Cell Line	embryonic stem cell

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