Variant report

Variant	rs11624209
Chromosome Location	chr14:68539630-68539631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10129355	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10129612	0.81[ASN][1000 genomes]
rs10130829	0.81[EUR][1000 genomes]
rs10132022	0.84[ASN][1000 genomes]
rs10133883	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10136129	0.81[EUR][1000 genomes]
rs10136868	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10137233	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139236	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139386	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10139548	0.82[AFR][1000 genomes]
rs10140097	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10140282	0.81[EUR][1000 genomes]
rs10140420	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140493	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143455	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10143843	0.81[EUR][1000 genomes]
rs10151115	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080956	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080957	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080958	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158715	0.81[ASN][1000 genomes]
rs11158717	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158718	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11158719	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622243	0.81[EUR][1000 genomes]
rs11622787	0.82[EUR][1000 genomes]
rs11623355	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11623467	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623984	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11624484	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11628745	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629073	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11844529	0.81[EUR][1000 genomes]
rs11846344	0.81[EUR][1000 genomes]
rs11848187	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11850191	0.81[EUR][1000 genomes]
rs11852180	0.81[EUR][1000 genomes]
rs12432681	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12436203	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12437043	0.87[ASN][1000 genomes]
rs12437178	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13329056	0.82[EUR][1000 genomes]
rs1548264	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1548265	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104889	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104908	0.86[ASN][1000 genomes]
rs1810639	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980654	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1980655	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2093358	0.81[ASN][1000 genomes]
rs2208596	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28470365	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28474827	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28509330	0.81[EUR][1000 genomes]
rs33949561	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899231	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899232	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902540	0.81[EUR][1000 genomes]
rs4902544	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4902545	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902547	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57069083	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57990032	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60201005	0.82[EUR][1000 genomes]
rs60471554	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573805	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6573814	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67566613	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68139749	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150168	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7151235	0.82[ASN][1000 genomes]
rs7154646	0.81[EUR][1000 genomes]
rs7156822	0.87[ASN][1000 genomes]
rs7157185	0.81[EUR][1000 genomes]
rs7158544	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7160115	0.81[EUR][1000 genomes]
rs7161069	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72725183	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72725185	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72725186	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72725187	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72725188	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72725190	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006492	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8011621	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014000	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020795	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9323502	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672142	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68532400-68544000	Weak transcription	Aorta	Aorta
2	chr14:68532400-68552400	Weak transcription	Ovary	ovary
3	chr14:68538200-68543600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:68539000-68540600	ZNF genes & repeats	Fetal Lung	lung
5	chr14:68539000-68542600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:68539400-68541800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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