Variant report

Variant	rs7156822
Chromosome Location	chr14:68569400-68569401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68569325..68572968-chr14:68576089..68579365,3	MCF-7	breast:
2	chr14:68559348..68562208-chr14:68567307..68571159,3	MCF-7	breast:
3	chr14:68569098..68575378-chr14:68600721..68608879,10	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10133883	0.80[ASN][1000 genomes]
rs10136868	0.80[ASN][1000 genomes]
rs10137233	0.87[ASN][1000 genomes]
rs10139236	0.87[ASN][1000 genomes]
rs10139386	0.87[ASN][1000 genomes]
rs10140420	0.87[ASN][1000 genomes]
rs10140493	0.87[ASN][1000 genomes]
rs10151115	0.87[ASN][1000 genomes]
rs1080956	0.87[ASN][1000 genomes]
rs1080957	0.87[ASN][1000 genomes]
rs1080958	0.87[ASN][1000 genomes]
rs11158717	0.80[ASN][1000 genomes]
rs11158719	0.87[ASN][1000 genomes]
rs11623355	0.80[ASN][1000 genomes]
rs11623467	0.87[ASN][1000 genomes]
rs11623984	0.80[ASN][1000 genomes]
rs11624209	0.87[ASN][1000 genomes]
rs11628745	0.87[ASN][1000 genomes]
rs11847339	0.83[ASN][1000 genomes]
rs11851597	0.83[ASN][1000 genomes]
rs12432681	0.80[ASN][1000 genomes]
rs12437043	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467673	0.81[AMR][1000 genomes]
rs1548264	0.87[ASN][1000 genomes]
rs1548265	0.87[ASN][1000 genomes]
rs1555944	0.87[AMR][1000 genomes]
rs17104889	0.87[ASN][1000 genomes]
rs17104908	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1810639	0.87[ASN][1000 genomes]
rs1951410	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1958112	0.87[AMR][1000 genomes]
rs1958116	0.82[AMR][1000 genomes]
rs1980654	0.80[ASN][1000 genomes]
rs1980655	0.80[ASN][1000 genomes]
rs2588813	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2588821	0.81[AMR][1000 genomes]
rs2588823	0.81[AMR][1000 genomes]
rs2588825	0.81[AMR][1000 genomes]
rs2588828	0.81[AMR][1000 genomes]
rs2588829	0.82[AMR][1000 genomes]
rs2588830	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2588831	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2588832	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2588833	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2588834	0.86[EUR][1000 genomes]
rs2588835	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2767365	0.83[EUR][1000 genomes]
rs2767366	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2767367	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs33949561	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs365934	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs372143	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs373918	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs378408	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs401021	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs408156	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs411547	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs419450	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs424032	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs431649	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs435620	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs437585	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs440627	0.88[EUR][1000 genomes]
rs445921	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs448445	0.88[EUR][1000 genomes]
rs4899231	0.87[ASN][1000 genomes]
rs4899232	0.87[ASN][1000 genomes]
rs4902545	0.82[ASN][1000 genomes]
rs4902547	0.87[ASN][1000 genomes]
rs4902548	0.83[ASN][1000 genomes]
rs60471554	0.80[ASN][1000 genomes]
rs60562079	0.83[ASN][1000 genomes]
rs6573814	0.80[ASN][1000 genomes]
rs6573817	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67566613	0.87[ASN][1000 genomes]
rs68139749	0.87[ASN][1000 genomes]
rs7141160	0.88[EUR][1000 genomes]
rs7141450	0.88[EUR][1000 genomes]
rs7145089	0.83[ASN][1000 genomes]
rs7149343	0.83[ASN][1000 genomes]
rs7150168	0.86[ASN][1000 genomes]
rs7151235	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7153978	0.83[ASN][1000 genomes]
rs7154228	0.83[ASN][1000 genomes]
rs7154645	0.83[ASN][1000 genomes]
rs7155152	0.83[ASN][1000 genomes]
rs7161069	0.80[ASN][1000 genomes]
rs72725190	0.87[ASN][1000 genomes]
rs8006492	0.80[ASN][1000 genomes]
rs8008413	0.83[ASN][1000 genomes]
rs8011527	0.84[AMR][1000 genomes]
rs8011621	0.87[ASN][1000 genomes]
rs8014000	0.87[ASN][1000 genomes]
rs8014524	0.88[EUR][1000 genomes]
rs9323502	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68566400-68570000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr14:68566600-68570800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:68567600-68569800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr14:68567600-68570000	ZNF genes & repeats	Fetal Intestine Small	intestine
5	chr14:68568200-68569400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr14:68568400-68570000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr14:68568800-68569400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:68568800-68570000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:68568800-68571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:68569000-68569400	Weak transcription	Aorta	Aorta
11	chr14:68569000-68569600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr14:68569000-68570400	Weak transcription	Fetal Lung	lung
13	chr14:68569000-68571200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:68569000-68572600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:68569000-68576000	Weak transcription	Adipose Nuclei	Adipose
16	chr14:68569000-68578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:68569200-68569400	Enhancers	Colon Smooth Muscle	Colon
18	chr14:68569200-68569800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr14:68569200-68570600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:68569200-68570600	Weak transcription	Osteobl	bone
21	chr14:68569200-68575800	Weak transcription	Primary T cells from cord blood	blood
22	chr14:68569200-68579200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr14:68569400-68569600	Active TSS	Colon Smooth Muscle	Colon
24	chr14:68569400-68574600	Enhancers	Rectal Smooth Muscle	rectum
25	chr14:68569400-68576200	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links