Variant report

Variant	rs424032
Chromosome Location	chr14:68572718-68572719
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68569325..68572968-chr14:68576089..68579365,3	MCF-7	breast:
2	chr14:68569854..68573880-chr14:68602556..68607160,7	MCF-7	breast:
3	chr14:68569098..68575378-chr14:68600721..68608879,10	MCF-7	breast:
4	chr14:68570562..68573394-chr14:68599517..68602198,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11158718	0.81[EUR][1000 genomes]
rs12437043	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12894297	0.80[EUR][1000 genomes]
rs1467673	0.81[AMR][1000 genomes]
rs1555944	0.87[AMR][1000 genomes]
rs17104908	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1951410	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1958112	0.90[AMR][1000 genomes]
rs1958116	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1980850	0.80[EUR][1000 genomes]
rs2588813	0.92[AMR][1000 genomes]
rs2588820	0.80[EUR][1000 genomes]
rs2588821	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2588823	0.81[AMR][1000 genomes]
rs2588825	0.81[AMR][1000 genomes]
rs2588826	0.82[EUR][1000 genomes]
rs2588828	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2588829	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2588830	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2588831	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2588832	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2588833	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2588834	0.88[EUR][1000 genomes]
rs2588835	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2767365	0.85[EUR][1000 genomes]
rs2767366	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2767367	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2767368	0.81[EUR][1000 genomes]
rs33949561	0.82[AMR][1000 genomes]
rs365934	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs372143	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs373918	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs378408	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs401021	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs408156	0.83[AMR][1000 genomes]
rs411547	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs419450	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs431649	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs435620	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs437585	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs440627	0.92[EUR][1000 genomes]
rs445921	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs448445	0.92[EUR][1000 genomes]
rs6573817	0.87[AMR][1000 genomes]
rs7141160	0.92[EUR][1000 genomes]
rs7141450	0.92[EUR][1000 genomes]
rs7151235	0.87[AMR][1000 genomes]
rs7156822	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72725185	0.80[EUR][1000 genomes]
rs72725186	0.81[EUR][1000 genomes]
rs72725187	0.80[EUR][1000 genomes]
rs72725188	0.80[EUR][1000 genomes]
rs8011527	0.87[AMR][1000 genomes]
rs8014524	0.92[EUR][1000 genomes]
rs9323502	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68569000-68576000	Weak transcription	Adipose Nuclei	Adipose
2	chr14:68569000-68578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:68569200-68575800	Weak transcription	Primary T cells from cord blood	blood
4	chr14:68569200-68579200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68569400-68574600	Enhancers	Rectal Smooth Muscle	rectum
6	chr14:68569400-68576200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:68569600-68574000	Enhancers	Colon Smooth Muscle	Colon
8	chr14:68570200-68572800	Enhancers	Fetal Heart	heart
9	chr14:68570400-68573800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:68570600-68573400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr14:68570600-68573800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr14:68570600-68573800	Enhancers	NHEK	skin
13	chr14:68570800-68573800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr14:68571000-68574000	Enhancers	Fetal Lung	lung
15	chr14:68571200-68573600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr14:68571400-68576200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr14:68571600-68572800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr14:68571600-68576000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:68571600-68576000	Weak transcription	A549	lung
20	chr14:68571600-68577400	Weak transcription	Fetal Kidney	kidney
21	chr14:68571800-68575200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:68571800-68575200	Weak transcription	NHDF-Ad	bronchial
23	chr14:68571800-68575800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:68571800-68576000	Weak transcription	Osteobl	bone
25	chr14:68571800-68580200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr14:68572000-68572800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:68572000-68573200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:68572000-68573200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:68572000-68575800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr14:68572000-68576000	Weak transcription	NHLF	lung
31	chr14:68572000-68580200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr14:68572200-68573200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr14:68572200-68575600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:68572400-68573000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr14:68572600-68572800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr14:68572600-68573400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr14:68572600-68573600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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