Variant report

Variant	rs373918
Chromosome Location	chr14:68573219-68573220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68569854..68573880-chr14:68602556..68607160,7	MCF-7	breast:
2	chr14:68569098..68575378-chr14:68600721..68608879,10	MCF-7	breast:
3	chr14:68570562..68573394-chr14:68599517..68602198,2	MCF-7	breast:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10129355	0.83[JPT][hapmap]
rs10129612	0.82[JPT][hapmap]
rs10132022	0.83[JPT][hapmap]
rs10139236	0.84[JPT][hapmap]
rs10139386	0.84[JPT][hapmap]
rs10143455	0.83[JPT][hapmap]
rs1022978	0.81[EUR][1000 genomes]
rs1080958	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs11158718	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs11158719	0.83[JPT][hapmap]
rs11622787	0.83[JPT][hapmap]
rs11623355	0.83[JPT][hapmap]
rs11623467	0.83[JPT][hapmap]
rs11624484	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs11629073	0.81[EUR][1000 genomes]
rs12436203	0.83[EUR][1000 genomes]
rs12437043	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12437178	0.83[JPT][hapmap]
rs1467673	0.83[CEU][hapmap]
rs1548264	0.84[JPT][hapmap];0.80[AMR][1000 genomes]
rs1548265	0.83[JPT][hapmap]
rs1555944	0.83[CEU][hapmap];0.84[AMR][1000 genomes]
rs1555945	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs17104889	0.83[JPT][hapmap]
rs17104908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1951410	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1952245	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs1952246	0.80[EUR][1000 genomes]
rs1958111	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs1958112	0.83[CEU][hapmap];0.84[AMR][1000 genomes]
rs1958113	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1958115	0.80[EUR][1000 genomes]
rs1958116	0.83[CEU][hapmap]
rs1980654	0.83[JPT][hapmap]
rs1980655	0.83[JPT][hapmap]
rs1980850	0.84[CEU][hapmap]
rs2038979	0.80[EUR][1000 genomes]
rs2208596	0.83[JPT][hapmap]
rs2243905	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs2588806	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2588807	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2588808	0.80[EUR][1000 genomes]
rs2588813	0.84[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2588814	0.80[EUR][1000 genomes]
rs2588815	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs2588816	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs2588818	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs2588819	0.80[EUR][1000 genomes]
rs2588821	0.83[CEU][hapmap]
rs2588823	0.83[CEU][hapmap]
rs2588825	0.83[CEU][hapmap]
rs2588827	0.82[EUR][1000 genomes]
rs2588828	0.84[CEU][hapmap]
rs2588830	0.94[CEU][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2588831	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2588832	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2588833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2588834	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2588835	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2767365	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs2767366	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2767367	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2767368	0.86[EUR][1000 genomes]
rs2767379	0.81[EUR][1000 genomes]
rs2767383	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs2767384	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs34558039	0.81[EUR][1000 genomes]
rs365934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs372143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs378408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs401021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs408156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs411547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs419450	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs424032	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs431649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs435620	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs437585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs440627	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs445921	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs448445	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6573805	0.83[JPT][hapmap]
rs6573817	0.83[CEU][hapmap];0.84[AMR][1000 genomes]
rs67566613	0.80[AMR][1000 genomes]
rs7141160	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7141450	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7145044	0.82[CEU][hapmap]
rs7150168	0.83[JPT][hapmap]
rs7151235	0.80[CEU][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7156822	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7158544	0.83[JPT][hapmap]
rs72725183	0.83[EUR][1000 genomes]
rs72725185	0.85[EUR][1000 genomes]
rs72725186	0.86[EUR][1000 genomes]
rs72725187	0.85[EUR][1000 genomes]
rs72725188	0.85[EUR][1000 genomes]
rs8011527	0.81[AMR][1000 genomes]
rs8014000	0.83[JPT][hapmap]
rs8014524	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8020795	0.83[JPT][hapmap]
rs959039	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68569000-68576000	Weak transcription	Adipose Nuclei	Adipose
2	chr14:68569000-68578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:68569200-68575800	Weak transcription	Primary T cells from cord blood	blood
4	chr14:68569200-68579200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68569400-68574600	Enhancers	Rectal Smooth Muscle	rectum
6	chr14:68569400-68576200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:68569600-68574000	Enhancers	Colon Smooth Muscle	Colon
8	chr14:68570400-68573800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:68570600-68573400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr14:68570600-68573800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr14:68570600-68573800	Enhancers	NHEK	skin
12	chr14:68570800-68573800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr14:68571000-68574000	Enhancers	Fetal Lung	lung
14	chr14:68571200-68573600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr14:68571400-68576200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:68571600-68576000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:68571600-68576000	Weak transcription	A549	lung
18	chr14:68571600-68577400	Weak transcription	Fetal Kidney	kidney
19	chr14:68571800-68575200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:68571800-68575200	Weak transcription	NHDF-Ad	bronchial
21	chr14:68571800-68575800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:68571800-68576000	Weak transcription	Osteobl	bone
23	chr14:68571800-68580200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr14:68572000-68575800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:68572000-68576000	Weak transcription	NHLF	lung
26	chr14:68572000-68580200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:68572200-68575600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:68572600-68573400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr14:68572600-68573600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr14:68572800-68575800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr14:68573000-68573400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr14:68573000-68575800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr14:68573200-68573600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:68573200-68573800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr14:68573200-68573800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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