Variant report

Variant	rs2588835
Chromosome Location	chr14:68598164-68598165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:68598150-68598375	MCF-7	breast:	n/a	n/a
2	POLR2A	chr14:68598144-68598186	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68594573..68597363-chr14:68597747..68600095,2	MCF-7	breast:
2	chr14:68593167..68594853-chr14:68598126..68600168,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258837	TF binding region
ENSG00000258837	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12437043	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1555944	0.86[AMR][1000 genomes]
rs17104908	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1958112	0.86[AMR][1000 genomes]
rs2588813	0.87[AMR][1000 genomes]
rs2588830	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2588831	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2588832	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2588833	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2588834	0.82[EUR][1000 genomes]
rs2767366	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2767367	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33949561	0.81[AMR][1000 genomes]
rs365934	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs372143	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs373918	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs378408	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs401021	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs408156	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs411547	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs424032	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs431649	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs435620	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs437585	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573817	0.86[AMR][1000 genomes]
rs7151235	0.86[AMR][1000 genomes]
rs7156822	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8011527	0.83[AMR][1000 genomes]
rs9323502	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68580600-68598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68592200-68603000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:68592400-68598600	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:68592400-68598800	Weak transcription	Ovary	ovary
5	chr14:68592400-68602200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr14:68592400-68604600	Weak transcription	Psoas Muscle	Psoas
7	chr14:68592400-68606200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:68592800-68598200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:68593000-68598800	Weak transcription	NH-A	brain
10	chr14:68593400-68598400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr14:68593400-68598600	Weak transcription	Fetal Kidney	kidney
12	chr14:68593400-68602000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:68593400-68603400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:68593600-68599000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:68594200-68598800	Weak transcription	Colon Smooth Muscle	Colon
16	chr14:68594200-68598800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr14:68594200-68599400	Weak transcription	A549	lung
18	chr14:68594200-68604400	Weak transcription	Fetal Stomach	stomach
19	chr14:68596200-68604800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr14:68598000-68598200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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