Variant report

Variant	rs4902545
Chromosome Location	chr14:68527878-68527879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68526034..68528423-chr14:69258225..69260701,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10129355	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10129612	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10130829	0.86[EUR][1000 genomes]
rs10132022	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10133262	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10133883	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10136129	0.86[EUR][1000 genomes]
rs10136174	0.81[EUR][1000 genomes]
rs10136790	0.84[EUR][1000 genomes]
rs10136868	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10137233	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10139236	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10139386	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10139548	0.81[EUR][1000 genomes]
rs10140097	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10140282	0.86[EUR][1000 genomes]
rs10140420	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10140493	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10143455	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10143843	0.86[EUR][1000 genomes]
rs10144995	0.81[EUR][1000 genomes]
rs10151115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10151387	0.81[EUR][1000 genomes]
rs10467735	0.84[EUR][1000 genomes]
rs1080956	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1080957	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1080958	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11158715	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11158717	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158718	0.80[AMR][1000 genomes]
rs11158719	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11622243	0.86[EUR][1000 genomes]
rs11622787	0.88[EUR][1000 genomes]
rs11623355	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11623467	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11623984	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11624209	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11624484	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11626280	0.84[EUR][1000 genomes]
rs11628745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11629073	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11844529	0.86[EUR][1000 genomes]
rs11846344	0.86[EUR][1000 genomes]
rs11848187	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11850191	0.86[EUR][1000 genomes]
rs11852180	0.86[EUR][1000 genomes]
rs12100584	0.83[EUR][1000 genomes]
rs12432681	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12436203	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12437043	0.82[ASN][1000 genomes]
rs12437178	0.88[EUR][1000 genomes]
rs13329056	0.88[EUR][1000 genomes]
rs1548264	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1548265	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17104764	0.84[EUR][1000 genomes]
rs17104889	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17104908	0.81[ASN][1000 genomes]
rs1810639	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1980654	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1980655	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2038565	0.81[EUR][1000 genomes]
rs2093358	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2208596	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28444723	0.81[EUR][1000 genomes]
rs28470365	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28474827	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28474995	0.81[EUR][1000 genomes]
rs28488544	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs28509330	0.86[EUR][1000 genomes]
rs2877369	0.84[EUR][1000 genomes]
rs33949561	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4436722	0.84[EUR][1000 genomes]
rs4899231	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4899232	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902535	0.84[EUR][1000 genomes]
rs4902536	0.84[EUR][1000 genomes]
rs4902538	0.84[EUR][1000 genomes]
rs4902539	0.84[EUR][1000 genomes]
rs4902540	0.86[EUR][1000 genomes]
rs4902544	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4902547	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57069083	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57990032	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60201005	0.88[EUR][1000 genomes]
rs60471554	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6573800	0.84[EUR][1000 genomes]
rs6573801	0.84[EUR][1000 genomes]
rs6573805	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6573814	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67566613	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68139749	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7142112	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7142210	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7142860	0.84[EUR][1000 genomes]
rs7145771	0.82[EUR][1000 genomes]
rs7146354	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7150168	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7154014	0.81[EUR][1000 genomes]
rs7154646	0.86[EUR][1000 genomes]
rs7155097	0.85[EUR][1000 genomes]
rs7156822	0.82[ASN][1000 genomes]
rs7157185	0.86[EUR][1000 genomes]
rs7158544	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7160115	0.86[EUR][1000 genomes]
rs7161069	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72725172	0.81[EUR][1000 genomes]
rs72725183	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72725185	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72725186	0.80[AMR][1000 genomes]
rs72725187	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72725188	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72725190	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8006437	0.84[EUR][1000 genomes]
rs8006492	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8011621	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8013677	0.84[EUR][1000 genomes]
rs8014000	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8015128	0.81[EUR][1000 genomes]
rs8016525	0.84[EUR][1000 genomes]
rs8020795	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8021404	0.81[EUR][1000 genomes]
rs8022206	0.81[EUR][1000 genomes]
rs9323502	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9672142	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv977622	chr14:68514820-68532469	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68527600-68528200	Enhancers	Ovary	ovary
2	chr14:68527800-68530600	Weak transcription	Fetal Lung	lung
3	chr14:68527800-68532400	Weak transcription	Small Intestine	intestine

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