Variant report

Variant	rs10133262
Chromosome Location	chr14:68407938-68407939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:38)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:38 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68405383..68414524-chr14:68603693..68608960,22	MCF-7	breast:
2	chr14:68405658..68408648-chr14:69273942..69276628,2	MCF-7	breast:
3	chr14:68407825..68409663-chr14:68862342..68864207,2	MCF-7	breast:
4	chr14:68405207..68413374-chr14:68603625..68613921,22	MCF-7	breast:
5	chr14:68304077..68306531-chr14:68406424..68408900,2	MCF-7	breast:
6	chr14:68405721..68408476-chr14:68436012..68438843,2	MCF-7	breast:
7	chr14:68407550..68410213-chr14:68431629..68433238,2	MCF-7	breast:
8	chr14:68407164..68408664-chr14:68656866..68659187,2	MCF-7	breast:
9	chr14:68406185..68411686-chr14:68720403..68727836,10	MCF-7	breast:
10	chr14:68406488..68409167-chr14:68711132..68714083,3	MCF-7	breast:
11	chr14:68406502..68410391-chr14:69284099..69289375,6	MCF-7	breast:
12	chr14:68401051..68404375-chr14:68404453..68408643,4	K562	blood:
13	chr14:68403008..68415592-chr14:69254956..69264690,41	MCF-7	breast:
14	chr14:68359134..68361352-chr14:68406025..68408962,2	MCF-7	breast:
15	chr14:68407338..68412061-chr14:68925199..68928533,5	MCF-7	breast:
16	chr14:68406857..68408477-chr14:68739231..68740855,2	MCF-7	breast:
17	chr14:68406192..68411564-chr14:69279428..69286293,11	MCF-7	breast:
18	chr14:68406980..68410129-chr14:68693689..68698967,5	MCF-7	breast:
19	chr14:68405978..68408761-chr14:68632650..68634652,2	MCF-7	breast:
20	chr14:68405495..68411980-chr14:69250946..69254866,9	MCF-7	breast:
21	chr14:68406708..68410646-chr14:69052499..69056687,4	MCF-7	breast:
22	chr14:68407844..68414968-chr14:68428702..68432615,7	MCF-7	breast:
23	chr14:68405745..68408366-chr14:68697948..68699941,3	MCF-7	breast:
24	chr14:68407559..68409151-chr14:68644615..68646770,2	MCF-7	breast:
25	chr14:68407881..68410251-chr14:68645249..68646841,2	MCF-7	breast:
26	chr14:68406762..68412382-chr14:68425953..68431173,8	MCF-7	breast:
27	chr14:68405746..68408665-chr14:68647500..68650644,3	MCF-7	breast:
28	chr14:68407418..68410166-chr14:68654124..68655771,2	MCF-7	breast:
29	chr14:68407343..68410074-chr14:68773850..68776325,3	MCF-7	breast:
30	chr14:68405927..68407979-chr14:68613878..68615812,2	MCF-7	breast:
31	chr14:68404009..68415107-chr14:68656381..68664155,17	MCF-7	breast:
32	chr14:68406746..68408855-chr14:68770868..68773760,2	MCF-7	breast:
33	chr14:68407933..68410630-chr14:69252286..69254725,3	MCF-7	breast:
34	chr14:68403242..68413680-chr14:69255078..69264293,34	MCF-7	breast:
35	chr14:68407127..68413734-chr14:68709753..68718255,16	MCF-7	breast:
36	chr14:68406635..68408147-chr14:68411464..68413637,2	MCF-7	breast:
37	chr14:68302059..68305269-chr14:68407604..68409424,3	MCF-7	breast:
38	chr14:68406606..68409324-chr14:68699073..68700717,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 232 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:231)

rs_ID	r²[population]
rs10129355	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10129612	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10130829	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10130919	0.83[GIH][hapmap]
rs10132022	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10132711	0.86[JPT][hapmap]
rs10132828	0.86[JPT][hapmap]
rs10133652	0.93[CHD][hapmap];0.82[JPT][hapmap]
rs10133883	0.92[EUR][1000 genomes]
rs10135316	0.82[JPT][hapmap]
rs10135925	0.93[CHD][hapmap];0.82[JPT][hapmap]
rs10136129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136174	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136868	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10137712	0.82[JPT][hapmap]
rs10139236	0.85[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs10139386	0.85[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs10139548	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10140097	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10140282	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10143219	0.82[JPT][hapmap]
rs10143455	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10143843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10143895	0.82[JPT][hapmap]
rs10144128	0.93[CHD][hapmap];0.82[JPT][hapmap]
rs10144995	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10145884	0.82[JPT][hapmap]
rs10146719	0.82[JPT][hapmap]
rs10146766	0.82[JPT][hapmap]
rs10146831	0.88[JPT][hapmap]
rs10147569	0.82[JPT][hapmap]
rs10148527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10148893	0.82[JPT][hapmap]
rs1015023	0.83[GIH][hapmap]
rs10151115	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10151123	0.82[JPT][hapmap]
rs10151317	0.82[JPT][hapmap]
rs10151387	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10450891	0.81[JPT][hapmap]
rs10467735	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10483805	0.80[CHB][hapmap]
rs1080956	0.84[EUR][1000 genomes]
rs1080957	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs1080958	0.84[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes]
rs10873210	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158710	0.93[CHD][hapmap];0.82[JPT][hapmap]
rs11158715	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158716	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs11158717	0.86[EUR][1000 genomes]
rs11158719	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs11158720	0.93[CHD][hapmap]
rs11158721	0.93[CHD][hapmap]
rs1118397	0.82[JPT][hapmap]
rs11622135	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs11622243	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11622787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11623355	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11623467	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs11623984	0.92[EUR][1000 genomes]
rs11624166	0.88[GIH][hapmap]
rs11624609	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs11626280	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626594	0.83[GIH][hapmap]
rs11628745	0.80[AFR][1000 genomes]
rs11844529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11846344	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11847628	0.80[CHB][hapmap];0.81[GIH][hapmap]
rs11848187	0.88[EUR][1000 genomes]
rs11848769	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs11850191	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11850946	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs11852180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11852208	0.87[EUR][1000 genomes]
rs12100584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12431697	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12432681	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12435554	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12437043	0.86[CHB][hapmap]
rs12437178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12437276	0.88[EUR][1000 genomes]
rs13329056	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1548264	0.85[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs1548265	0.85[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap]
rs17104764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104774	0.82[JPT][hapmap]
rs17104776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17104783	0.88[JPT][hapmap]
rs17104786	0.93[CHD][hapmap];0.82[JPT][hapmap]
rs17104793	0.81[JPT][hapmap]
rs17104796	0.93[CHD][hapmap];0.82[JPT][hapmap]
rs17104799	0.81[JPT][hapmap]
rs17104800	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104823	0.93[CHD][hapmap];0.82[JPT][hapmap]
rs17104824	0.82[JPT][hapmap]
rs17104827	0.82[JPT][hapmap]
rs17104829	0.82[JPT][hapmap]
rs17104863	0.93[CHD][hapmap]
rs17104889	0.83[ASW][hapmap];0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap]
rs17104908	0.80[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs17104917	0.93[CHD][hapmap]
rs17192558	0.85[CEU][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs17192586	0.85[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs17783124	0.81[GIH][hapmap]
rs17783202	0.93[CHD][hapmap];0.82[JPT][hapmap]
rs17783304	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs181563	0.81[GIH][hapmap]
rs181572	0.80[CHB][hapmap]
rs181575	0.80[CHB][hapmap];0.81[GIH][hapmap]
rs1950766	0.82[JPT][hapmap]
rs1950767	0.98[ASN][1000 genomes]
rs1950769	0.83[GIH][hapmap]
rs1956346	0.80[CHB][hapmap]
rs1980654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1980655	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2009191	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038565	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs2093358	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2180537	0.93[CHD][hapmap];0.82[JPT][hapmap]
rs2208596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2235962	0.80[CHB][hapmap]
rs2235963	0.80[CHB][hapmap]
rs2235965	0.80[CHB][hapmap]
rs2588832	0.80[CHB][hapmap];1.00[CHD][hapmap]
rs2588833	0.80[CHB][hapmap];1.00[CHD][hapmap]
rs2767366	1.00[CHD][hapmap]
rs28444723	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28470365	0.84[EUR][1000 genomes]
rs28474827	0.85[EUR][1000 genomes]
rs28474995	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28488544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28509330	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28649231	0.83[AMR][1000 genomes]
rs2877369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28855496	0.98[ASN][1000 genomes]
rs34588410	0.88[EUR][1000 genomes]
rs34723132	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs372143	0.80[CHB][hapmap];1.00[CHD][hapmap]
rs401021	0.80[CHB][hapmap]
rs408156	0.80[CHB][hapmap]
rs431649	0.80[CHB][hapmap];1.00[CHD][hapmap]
rs437585	0.80[CHB][hapmap]
rs4436722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4569184	0.80[CHB][hapmap]
rs4899231	0.84[EUR][1000 genomes]
rs4899232	0.83[EUR][1000 genomes]
rs4902533	0.98[ASN][1000 genomes]
rs4902535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902536	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902538	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902539	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902544	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902545	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs57990032	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58151429	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60201005	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60415085	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60471554	0.92[EUR][1000 genomes]
rs6573800	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573801	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573802	0.81[JPT][hapmap]
rs6573805	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573814	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67566613	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7142112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142860	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145044	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7145771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147296	0.93[CHD][hapmap];0.82[JPT][hapmap]
rs7147522	0.93[CHD][hapmap]
rs7147935	0.93[CHD][hapmap]
rs7148799	0.93[CHD][hapmap]
rs7149343	0.93[CHD][hapmap]
rs7149460	0.82[JPT][hapmap]
rs7150168	0.80[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes]
rs7151091	0.88[GIH][hapmap]
rs7151917	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7154014	0.84[EUR][1000 genomes]
rs7154646	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7154725	0.82[JPT][hapmap]
rs7155097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7155840	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7155985	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7157185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7157550	0.82[JPT][hapmap]
rs7157720	0.82[JPT][hapmap]
rs7158544	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7160115	0.85[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161069	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72725138	0.81[EUR][1000 genomes]
rs72725141	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72725149	0.89[EUR][1000 genomes]
rs72725151	0.88[EUR][1000 genomes]
rs72725153	0.88[EUR][1000 genomes]
rs72725156	0.84[EUR][1000 genomes]
rs72725157	0.88[EUR][1000 genomes]
rs72725159	0.84[EUR][1000 genomes]
rs72725165	0.87[EUR][1000 genomes]
rs72725168	0.88[EUR][1000 genomes]
rs72725170	0.88[EUR][1000 genomes]
rs72725172	0.84[EUR][1000 genomes]
rs72725174	0.81[EUR][1000 genomes]
rs7359083	0.93[CHD][hapmap]
rs8003431	0.81[GIH][hapmap]
rs8006089	0.80[CHB][hapmap];0.81[GIH][hapmap]
rs8006175	0.82[JPT][hapmap]
rs8006437	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8006492	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8007347	0.93[CHD][hapmap]
rs8008791	0.93[CHD][hapmap];0.82[JPT][hapmap]
rs8011621	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs8013677	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014000	0.89[ASW][hapmap];0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.90[YRI][hapmap]
rs8015128	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs8015741	0.82[JPT][hapmap]
rs8016525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017013	0.81[GIH][hapmap]
rs8020512	0.82[JPT][hapmap]
rs8020795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8021404	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs8022206	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs9323501	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961700	0.88[GIH][hapmap]
rs9652362	0.82[JPT][hapmap]
rs9652363	0.82[JPT][hapmap]
rs9652364	0.82[JPT][hapmap]
rs9672142	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9796374	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10133262	GALNTL1	cis	parietal	SCAN

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68395400-68408000	Weak transcription	Ovary	ovary
2	chr14:68403800-68409400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr14:68404000-68409600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:68404200-68409600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:68404600-68408200	Weak transcription	Esophagus	oesophagus
6	chr14:68404800-68409000	Enhancers	Fetal Lung	lung
7	chr14:68405400-68408000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:68405600-68408000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr14:68406200-68408000	Enhancers	Liver	Liver
10	chr14:68406200-68408400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr14:68406200-68409000	Enhancers	Fetal Muscle Leg	muscle
12	chr14:68406200-68409400	Enhancers	HepG2	liver
13	chr14:68406400-68408000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr14:68406400-68408000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:68406400-68408400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:68406800-68408200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:68406800-68408600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:68406800-68408600	Enhancers	Placenta	Placenta
19	chr14:68406800-68411800	Enhancers	Fetal Stomach	stomach
20	chr14:68406800-68412000	Enhancers	Colon Smooth Muscle	Colon
21	chr14:68407000-68408000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:68407000-68408400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr14:68407000-68408400	Enhancers	Pancreas	Pancrea
24	chr14:68407000-68408600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:68407000-68408600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:68407000-68408600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr14:68407000-68408600	Enhancers	HMEC	breast
28	chr14:68407000-68408800	Enhancers	Stomach Mucosa	stomach
29	chr14:68407000-68408800	Enhancers	HSMMtube	muscle
30	chr14:68407000-68409200	Enhancers	Muscle Satellite Cultured Cells	--
31	chr14:68407000-68409400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr14:68407000-68409400	Enhancers	Fetal Kidney	kidney
33	chr14:68407000-68409400	Enhancers	Osteobl	bone
34	chr14:68407000-68411800	Enhancers	Rectal Smooth Muscle	rectum
35	chr14:68407000-68412000	Enhancers	NHLF	lung
36	chr14:68407200-68408000	Enhancers	Brain Anterior Caudate	brain
37	chr14:68407200-68408000	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr14:68407200-68408400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr14:68407200-68408400	Enhancers	Brain Substantia Nigra	brain
40	chr14:68407200-68408400	Enhancers	Fetal Brain Male	brain
41	chr14:68407200-68408600	Enhancers	HSMM	muscle
42	chr14:68407200-68408600	Enhancers	NH-A	brain
43	chr14:68407200-68408800	Enhancers	Aorta	Aorta
44	chr14:68407200-68409000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr14:68407200-68409400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:68407200-68409400	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr14:68407200-68409400	Enhancers	Brain Cingulate Gyrus	brain
48	chr14:68407200-68409400	Enhancers	Fetal Intestine Small	intestine
49	chr14:68407200-68409400	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr14:68407200-68409400	Enhancers	Skeletal Muscle Female	skeletal muscle

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